Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IAQ69_RS13530 Genome accession   NZ_CP060811
Coordinates   2820223..2822346 (-) Length   707 a.a.
NCBI ID   WP_413785367.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2815223..2827346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13515 (IAQ69_13510) - 2817678..2818529 (-) 852 WP_179992175.1 hypothetical protein -
  IAQ69_RS13520 (IAQ69_13515) aroB 2818542..2819621 (-) 1080 WP_180104158.1 3-dehydroquinate synthase -
  IAQ69_RS13525 (IAQ69_13520) aroK 2819650..2820186 (-) 537 WP_005233593.1 shikimate kinase AroK -
  IAQ69_RS13530 (IAQ69_13525) pilQ 2820223..2822346 (-) 2124 WP_413785367.1 type IV pilus secretin PilQ Machinery gene
  IAQ69_RS13535 (IAQ69_13530) pilP 2822408..2822935 (-) 528 WP_180053721.1 pilus assembly protein PilP Machinery gene
  IAQ69_RS13540 (IAQ69_13535) pilO 2822935..2823651 (-) 717 WP_034702183.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAQ69_RS13545 (IAQ69_13540) comN 2823648..2824286 (-) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  IAQ69_RS13550 (IAQ69_13545) pilM 2824286..2825344 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76639.69 Da        Isoelectric Point: 5.2209

>NTDB_id=478545 IAQ69_RS13530 WP_413785367.1 2820223..2822346(-) (pilQ) [Acinetobacter variabilis strain XM9F202-2]
MNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYHLESPSRLILDFNEAQQNLKQSSI
PVATAEASSVDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATPVAIAQPVQQQVAQGITHIGFQRGAQGEGLVV
IDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSSVDAVNQNGSGVITIQSAESYEYMAFQTDNKLTI
SLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKSASGSGSSNSTSNGDDRESLL
SSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGILSQGITNNNHLLVGGS
DTTLWDLREPEFDSERGGWSYEIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTAD
KQKATVASGSQIPYQSAEGGGANAVSTTSFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLTINKNQINTNV
LVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKADNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=478545 IAQ69_RS13530 WP_413785367.1 2820223..2822346(-) (pilQ) [Acinetobacter variabilis strain XM9F202-2]
ATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGCTGTCGCGATTGCTGTGATGCAAGCAGCGAGTGCGCAAGTTTCAAT
GACCAATGTAGTGCCAATGCAAATTCCTGGACAGGGAACTGAAATCCGGGTGATGTTTAATGGCTTGCCACCTCAGCCTC
AAGCTTATCACCTTGAATCTCCATCACGCCTGATTCTGGATTTTAATGAGGCCCAACAAAATCTAAAACAGTCTAGTATT
CCAGTCGCAACTGCTGAAGCCAGTTCAGTGGATGTTAGCTCAGATGCACAGCGTTCTCGACTGACGGTGAATCTCGCTAA
TGCAGGTGCATTTACGACGCGTGTGGAAGGCAATACCTTTATTTTAAAAATTAATTCTGCTACTCCAGTCGCTATTGCTC
AGCCTGTACAACAACAGGTCGCTCAGGGGATTACTCATATTGGTTTCCAGCGGGGTGCGCAAGGTGAAGGACTGGTGGTA
ATTGATCTGGCAGGTCAGAACACACCAGTCGATGTACAGCAGCAGGGAACCAAAGTGATTGTGCGGACTCTGGGCTCCAA
GATTCCGGCACATTTGACCCGTCGCTTAAATGTGAATGATTTTGCTACACCAGTTTCGAGTGTAGACGCAGTCAATCAGA
ATGGCTCAGGTGTAATTACTATTCAATCTGCGGAAAGCTATGAATATATGGCTTTTCAAACTGATAATAAGCTGACGATT
AGTTTGAAGCGTCCAGAAGTTAAAGGGCCTTTACGTCCTAAATCAGTCGCTTATACAGGCAAGAAAATTTCCCTCGATTT
CCAAGATATTGAAGTCCGTCGAGTTCTACAGTTATTAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTAC
AGGGTAATATTACCTTACGCCTCAAAGAAGTGCCTTGGGATCAGGCTTTAGATATTGTGTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGTAATGTGATCTGGATTGCACCGGTGGCAGAACTAATTAAGGCCGAAGAAGAAGAAGCGAAAGCACT
AGCACAGAGTGTTAAGCTTGCACCAATTCAAACTGAATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAAC
TGATTACTCAAAATAAGAGTGCATCAGGATCAGGGAGCTCGAATAGCACAAGTAACGGTGATGATAGAGAAAGTTTACTA
AGTTCACGTGGTTCTATCTCTATTGATGCTCGTACCAATACCATTATTGTGAATGATACCCAGCCTTTCATTGATAAAAT
TCGCAATATGGTGGATCTGCTGGATGTACAAGTGAAACAGGTAATGGTTGAGGCACGTATCGTTCGTGCAACCACTGACT
TTACCAAAGAAATGGGAGTGAAGTGGGGAATCCTATCTCAAGGGATTACCAATAATAATCACCTTCTTGTTGGTGGTAGT
GATACGACTCTTTGGGATCTTAGGGAGCCTGAGTTTGATAGTGAGAGAGGGGGATGGAGTTATGAAATTCAAAGACCAGA
TAACCTAAATGTGGATTTAGGTGTCACTAGTCAAGGTGCAAGCCGTATTGCTTTTGGCTTAATTAGCCTTTCTGATTTTA
TGCTGGATCTTGAACTTTCTGCGCTACAGGCAGATGGTTATGGTGAAGTGATTTCTACGCCAAAAGTGCTCACTGCTGAC
AAACAAAAAGCAACCGTTGCCTCCGGTTCGCAAATTCCATATCAGTCTGCAGAAGGTGGTGGTGCTAATGCAGTGTCGAC
TACATCATTTATTGATGCAACTTTAAGTTTAGATGTAACACCAAGTATTACTCCAGATGGCAAGGTACAGATGGAGTTGA
ATATTACCAGTGACTCACCAGGAAACCCGACCCCAACTGGACAGTTAACCATTAATAAAAATCAGATTAACACTAATGTA
CTGGTTGATAATGGTGAAACAGTAGTACTTGGTGGTATTTTTGAGCAAGAAACTCGAAATGCACAAACTAAAGTTCCTTT
CTTGGGCGATCTACCTTATTTAGGCCGTTTGTTCCGTAAAGATGTAAAAGCGGACAACAAACGTGAGTTACTGATTTTTG
TTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-440)

Secretin and TonB N terminus short domain (STN)

(290-332)

AMIN domain (AMIN)

(40-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.533

100

0.762
  pilQ Acinetobacter baumannii strain A118

73.397

100

0.761
  comQ Acinetobacter baylyi ADP1

70.556

100

0.719
  pilQ Pseudomonas aeruginosa PAK

41.523

98.444

0.409
  pilQ Legionella pneumophila strain Lp02

37.941

100

0.38
  pilQ Legionella pneumophila strain ERS1305867

37.98

99.434

0.378