Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   IAQ69_RS13545 Genome accession   NZ_CP060811
Coordinates   2823648..2824286 (-) Length   212 a.a.
NCBI ID   WP_179992180.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2818648..2829286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13525 (IAQ69_13520) aroK 2819650..2820186 (-) 537 WP_005233593.1 shikimate kinase AroK -
  IAQ69_RS13530 (IAQ69_13525) pilQ 2820223..2822346 (-) 2124 WP_413785367.1 type IV pilus secretin PilQ Machinery gene
  IAQ69_RS13535 (IAQ69_13530) pilP 2822408..2822935 (-) 528 WP_180053721.1 pilus assembly protein PilP Machinery gene
  IAQ69_RS13540 (IAQ69_13535) pilO 2822935..2823651 (-) 717 WP_034702183.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAQ69_RS13545 (IAQ69_13540) comN 2823648..2824286 (-) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  IAQ69_RS13550 (IAQ69_13545) pilM 2824286..2825344 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene
  IAQ69_RS13555 (IAQ69_13550) ponA 2825511..2828039 (+) 2529 WP_180159419.1 penicillin-binding protein PBP1a -
  IAQ69_RS13560 (IAQ69_13555) - 2828098..2828901 (-) 804 WP_180104160.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23704.89 Da        Isoelectric Point: 4.7909

>NTDB_id=478548 IAQ69_RS13545 WP_179992180.1 2823648..2824286(-) (comN) [Acinetobacter variabilis strain XM9F202-2]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVVSTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPGNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPATTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=478548 IAQ69_RS13545 WP_179992180.1 2823648..2824286(-) (comN) [Acinetobacter variabilis strain XM9F202-2]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGCGCAGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTATTATGATCAAAAACTTCAGGATCAGGAACAGGCCA
ACCAGCTGGTGGTCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTCTACAGACTCAACGGCCGATTGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAGGCAATATGTATATTACCAAATTCCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCAGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAAGCTTCCACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAGCCAAAAGATAAAGCGCCATCCTCAGTGATTCCTCGAGTAGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGCCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.048

97.642

0.684
  pilN Acinetobacter baumannii D1279779

67.805

96.698

0.656