Detailed information NTG0478534

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: IAQ69_RS08300
• Genome accession: NZ_CP060811
• Coordinates: 1768993..1770189 (-)
• Length: 398 a.a.
• NCBI ID: WP_125278619.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain XM9F202-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1763993..1775189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAQ69_RS08285 (IAQ69_08280)	-	1766006..1767034 (+)	1029	WP_200228599.1	AraC family transcriptional regulator	-
IAQ69_RS08290 (IAQ69_08285)	gcvH	1767117..1767491 (+)	375	WP_104426083.1	glycine cleavage system protein GcvH	-
IAQ69_RS08295 (IAQ69_08290)	-	1767744..1768919 (+)	1176	WP_200228601.1	MFS transporter	-
IAQ69_RS08300 (IAQ69_08295)	pilU	1768993..1770189 (-)	1197	WP_125278619.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
IAQ69_RS08305 (IAQ69_08300)	pilU	1770593..1771771 (-)	1179	WP_200228602.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
IAQ69_RS08310 (IAQ69_08305)	-	1772027..1773076 (-)	1050	WP_159122908.1	3-deoxy-7-phosphoheptulonate synthase	-
IAQ69_RS08315 (IAQ69_08310)	-	1773615..1774139 (-)	525	WP_159122907.1	hypothetical protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 44958.50 Da
• Isoelectric Point: 6.5072

>NTDB_id=478534 IAQ69_RS08300 WP_125278619.1 1768993..1770189(-) (pilU) [Acinetobacter variabilis strain XM9F202-2]
MFTAELLDEAKKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQILTAEKTKLFAYSLMNDKQRQEFEAELEC
NFAITVPGVSRFRVNVFVQQLQVGMVIRTITAEIPNFQKLKLPESLKHVIMEKRGLVLVVGGTGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMGKS
RELGMQTFDQALFDLYNEGAISYEEALRNADSTNELRLQIKLKSNRQDNPAAGEATQFTMMQEPKAEEKEQENTSASE

Nucleotide

• Length: 1197 bp

>NTDB_id=478534 IAQ69_RS08300 WP_125278619.1 1768993..1770189(-) (pilU) [Acinetobacter variabilis strain XM9F202-2]
ATGTTCACGGCAGAACTGTTGGACGAAGCAAAAAAATTCATGCATCACATGCTGACCAAAGTAGTGGAATATGGGGGCTC
AGACTTATTTATTACCGCAGATTTTCCACCGAGTATTAAACATCAGGGCTTAATGAAGCCCTTTGGACAACAAATTCTTA
CTGCTGAAAAAACCAAACTGTTTGCTTATAGCTTGATGAATGATAAACAGCGTCAAGAGTTTGAAGCTGAACTGGAATGT
AACTTCGCGATTACTGTACCGGGTGTATCGCGCTTCCGGGTAAATGTTTTTGTACAACAGCTTCAGGTCGGGATGGTAAT
CCGGACTATTACGGCAGAAATTCCAAATTTCCAGAAACTGAAATTACCAGAATCATTGAAACACGTGATTATGGAAAAAC
GCGGTCTGGTACTGGTTGTAGGAGGAACGGGTTCAGGTAAATCGACCTCTCTGGCAGCGATGATTGACTACCGCAATGAA
AATTCGGCGGGGCATATCATTACCGTGGAAGATCCGGTGGAATATGTACATAAACACAAGAAATCCATGATTACTCACCG
TGAAGTTGGAGTCGATTGCCATTCCTGGCACAATGCGCTGAAAAATACCTTGCGTCAGGCCCCCGATGTAATTCTGATCG
GTGAGATTCGGGATACCGAAACCATGGAACACGCAATTGCCTTTGCTGAAACCGGACATTTATGTCTGGGTACACTGCAT
TCCAATAATGCTAACCAGACTTTGGACCGGATTATTAACTTCTTCCCGGAAGAACGCCGTAATCAGTTATTAATGGATTT
ATCTTCGAATATGAAGGCGATTATTTCCCAGCGTCTGATTCGTACTCAGGATGGAAAAGGGCGTCGGGCTGCAATTGAAA
TCATGTTAAATACACCTTTGATTTCTGATCTGATTCTAAAAGGTGAGTTTCATGAGCTGAAGGCCATTATGGGCAAATCT
CGTGAACTGGGCATGCAGACTTTCGATCAGGCCTTATTTGACCTGTATAACGAGGGTGCGATTTCTTATGAGGAAGCATT
GCGTAATGCTGATTCGACTAATGAATTACGTTTACAGATCAAGCTGAAAAGCAACCGCCAGGATAATCCTGCTGCTGGAG
AAGCAACACAATTCACGATGATGCAAGAACCGAAAGCTGAAGAAAAAGAACAAGAAAATACTTCAGCATCTGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.92	87.437	0.533
pilU	Acinetobacter baylyi ADP1	55.908	87.186	0.487
pilU	Vibrio cholerae strain A1552	51.781	91.709	0.475
pilT	Pseudomonas aeruginosa PAK	44.172	81.91	0.362
pilT	Acinetobacter nosocomialis M2	43.636	82.915	0.362
pilT	Acinetobacter baumannii D1279779	43.636	82.915	0.362
pilT	Acinetobacter baumannii strain A118	43.636	82.915	0.362