Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DDR89_RS05870 Genome accession   NZ_CP071460
Coordinates   1137940..1139280 (-) Length   446 a.a.
NCBI ID   WP_002858434.1    Uniprot ID   Q9PN90
Organism   Campylobacter jejuni strain CAMSA2002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132940..1144280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDR89_RS05845 (DDR89_05845) - 1133077..1133847 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  DDR89_RS05850 (DDR89_05850) metE 1133859..1136123 (+) 2265 WP_002858088.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  DDR89_RS05855 (DDR89_05855) metF 1136133..1136981 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  DDR89_RS05860 (DDR89_05860) - 1137003..1137194 (-) 192 WP_002852856.1 membrane protein -
  DDR89_RS05865 (DDR89_05865) atpB 1137191..1137871 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  DDR89_RS05870 (DDR89_05870) radA 1137940..1139280 (-) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  DDR89_RS05875 (DDR89_05875) pilA 1139280..1140146 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  DDR89_RS05880 (DDR89_05880) - 1140146..1140703 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  DDR89_RS05885 (DDR89_05885) - 1140786..1141412 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  DDR89_RS05890 (DDR89_05890) rny 1141333..1142886 (+) 1554 WP_002858133.1 ribonuclease Y -
  DDR89_RS05895 (DDR89_05895) - 1142895..1143452 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49024.91 Da        Isoelectric Point: 6.9288

>NTDB_id=477117 DDR89_RS05870 WP_002858434.1 1137940..1139280(-) (radA) [Campylobacter jejuni strain CAMSA2002]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=477117 DDR89_RS05870 WP_002858434.1 1137940..1139280(-) (radA) [Campylobacter jejuni strain CAMSA2002]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGCATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAGCATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTAATGGAGGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTGGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACGGGCTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTGGGGCA
TTATGATGTATTTGTAAATATTAGTGGCGGAGTAAAAGTAAGCGAAACTGCGGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.897

97.534

0.457
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457