Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLH_RS02245 Genome accession   NC_017492
Coordinates   441294..441683 (+) Length   129 a.a.
NCBI ID   WP_011675463.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris A76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 441294..451077 441294..441683 within 0


Gene organization within MGE regions


Location: 441294..451077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH_RS02245 (llh_2290) ssbB 441294..441683 (+) 390 WP_011675463.1 single-stranded DNA-binding protein Machinery gene
  LLH_RS02250 (llh_2295) groES 441802..442086 (+) 285 WP_011675464.1 co-chaperone GroES -
  LLH_RS02255 (llh_2300) groL 442173..443801 (+) 1629 WP_011675465.1 chaperonin GroEL -
  LLH_RS02260 (llh_2305) - 443853..444665 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLH_RS02270 (llh_2315) - 444855..446282 (-) 1428 WP_011675468.1 cell wall metabolism sensor histidine kinase WalK -
  LLH_RS02275 (llh_2320) yycF 446275..446976 (-) 702 WP_003131580.1 response regulator YycF -
  LLH_RS02280 (llh_2325) tmk 447154..447789 (+) 636 WP_014572049.1 dTMP kinase -
  LLH_RS02285 (llh_2330) - 447922..448782 (+) 861 WP_011675470.1 DNA polymerase III subunit delta' -
  LLH_RS02290 (llh_2335) ricT 448832..449614 (+) 783 WP_011834464.1 stage 0 sporulation family protein -
  LLH_RS02295 (llh_2340) yabA 449607..449933 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LLH_RS02300 (llh_2345) rsmI 449933..450808 (+) 876 WP_014572050.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLH_RS02305 (llh_2350) - 450886..451077 (-) 192 WP_011675474.1 hypothetical protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14650.71 Da        Isoelectric Point: 6.4793

>NTDB_id=47680 LLH_RS02245 WP_011675463.1 441294..441683(+) (ssbB) [Lactococcus cremoris subsp. cremoris A76]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=47680 LLH_RS02245 WP_011675463.1 441294..441683(+) (ssbB) [Lactococcus cremoris subsp. cremoris A76]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

96.899

100

0.969
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

55.385

100

0.558

Multiple sequence alignment