Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H9L11_RS06600 Genome accession   NZ_CP060589
Coordinates   1396900..1398009 (-) Length   369 a.a.
NCBI ID   WP_205391057.1    Uniprot ID   -
Organism   Vibrio sp. sp1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1391900..1403009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS06570 (H9L11_06570) hemF 1392363..1393280 (-) 918 WP_033906570.1 oxygen-dependent coproporphyrinogen oxidase -
  H9L11_RS06575 (H9L11_06575) - 1393328..1393885 (-) 558 WP_033906571.1 L-threonylcarbamoyladenylate synthase -
  H9L11_RS06580 (H9L11_06580) purE 1394085..1394570 (+) 486 WP_033906572.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H9L11_RS06585 (H9L11_06585) - 1394575..1395708 (+) 1134 WP_033906573.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  H9L11_RS06590 (H9L11_06590) - 1395772..1396341 (-) 570 WP_033906574.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  H9L11_RS06595 (H9L11_06595) - 1396418..1396897 (-) 480 WP_033906575.1 DUF494 family protein -
  H9L11_RS06600 (H9L11_06600) dprA 1396900..1398009 (-) 1110 WP_205391057.1 DNA-processing protein DprA Machinery gene
  H9L11_RS06605 (H9L11_06605) - 1397993..1399087 (-) 1095 WP_033906576.1 LysM peptidoglycan-binding domain-containing protein -
  H9L11_RS06610 (H9L11_06610) def 1399226..1399744 (+) 519 WP_005379068.1 peptide deformylase -
  H9L11_RS06615 (H9L11_06615) fmt 1399778..1400725 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  H9L11_RS06620 (H9L11_06620) rsmB 1400806..1402089 (+) 1284 WP_033906577.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40021.75 Da        Isoelectric Point: 7.2248

>NTDB_id=476769 H9L11_RS06600 WP_205391057.1 1396900..1398009(-) (dprA) [Vibrio sp. sp1]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASFDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=476769 H9L11_RS06600 WP_205391057.1 1396900..1398009(-) (dprA) [Vibrio sp. sp1]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTTTTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379