Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JS608_RS01595 Genome accession   NZ_CP071042
Coordinates   324077..324871 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 319077..329871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS01575 (JS608_00318) - 319411..320418 (-) 1008 WP_014306163.1 ThiF family adenylyltransferase -
  JS608_RS01580 (JS608_00319) - 320650..322068 (-) 1419 WP_057080361.1 cell wall metabolism sensor histidine kinase WalK -
  JS608_RS01585 (JS608_00320) - 322065..322277 (-) 213 WP_057080362.1 winged helix-turn-helix domain-containing protein -
  JS608_RS01590 (JS608_00321) htrA 322794..323990 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  JS608_RS01595 (JS608_00322) vicX 324077..324871 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  JS608_RS01600 (JS608_00323) - 324886..325725 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  JS608_RS01605 (JS608_00324) yycH 325712..327070 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  JS608_RS01610 (JS608_00325) walK 327060..328895 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  JS608_RS01615 (JS608_00326) walR 328902..329609 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=475615 JS608_RS01595 WP_004393110.1 324077..324871(-) (vicX) [Bacillus amyloliquefaciens isolate ELA1901024]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=475615 JS608_RS01595 WP_004393110.1 324077..324871(-) (vicX) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTAATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAGTCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527