Detailed information NTG0475615

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PSBA01_RS05760
• Genome accession: NZ_CP060390
• Coordinates: 1349988..1351211 (+)
• Length: 407 a.a.
• NCBI ID: WP_093069696.1
• Uniprot ID: -
• Organism: Psychrobacter sp. KCTC 72983
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1344988..1356211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSBA01_RS05745	secG	1345768..1346076 (-)	309	WP_021814138.1	preprotein translocase subunit SecG	-
PSBA01_RS05750	tpiA	1346292..1347104 (-)	813	WP_093069701.1	triose-phosphate isomerase	-
PSBA01_RS05755	pilB	1347772..1349487 (+)	1716	WP_093069698.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSBA01_RS05760	pilC	1349988..1351211 (+)	1224	WP_093069696.1	type II secretion system F family protein	Machinery gene
PSBA01_RS05765	pilD	1351219..1352121 (+)	903	WP_093069694.1	prepilin peptidase	Machinery gene
PSBA01_RS05770	coaE	1352225..1352911 (+)	687	WP_093069692.1	dephospho-CoA kinase	-
PSBA01_RS05775	rlmB	1352874..1353644 (-)	771	WP_093069689.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PSBA01_RS05780	-	1353891..1354226 (-)	336	WP_058023616.1	pyrimidine/purine nucleoside phosphorylase	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44671.68 Da
• Isoelectric Point: 9.7648

>NTDB_id=475615 PSBA01_RS05760 WP_093069696.1 1349988..1351211(+) (pilC) [Psychrobacter sp. KCTC 72983]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKPIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAIKYPIAVIVVAIIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMKAWWFILIIFIGGAIIGF
SEAKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQVKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide

• Length: 1224 bp

>NTDB_id=475615 PSBA01_RS05760 WP_093069696.1 1349988..1351211(+) (pilC) [Psychrobacter sp. KCTC 72983]
ATGGCAAAAGCTAAGACTGACATGCTGTTGGACTTTGTCTATGATGGCGTAAACCGGCGCGGGCAAAAGGTGAAAGGCGA
AACCACTAGTCGTAGCTTAGAGTTAGCCAAAGCTACTTTACGCAAGCAAGGGATCACGGTTAAAGGTATCAAGAAGAAAC
CAAAACCGCTCTACACCTTCAAAAAACCAATTAAAGCCATTGATATTGCGATTTTTGCGCGACAATTGGCAACGATGATG
AAAGCAGGTGTCCCGCTGACTCAATCTTTTGAAATTGTAGCAGATTCGCTTGATAATCCGAGTATGAAAGACTTGGTGCT
ACAAATCAAAGCTGATATCGAAGCAGGTGGCACCTTTGCTTCCGCCCTACGTAAACACCCTCGTTACTTTGATGATCTAT
TCTGCTCACTCGTCGAATCTGGTGAACAATCGGGTGCGCTAGAGACCATGCTTGAGCGTGTAGCGACTTACAAAGAAAAA
AGCGAATTACTAAAAGCAAAGATTAAGAAAGCAATAAAATATCCGATTGCTGTCATCGTAGTTGCCATTATCGTTACTAT
GATTCTATTAATAAAAGTCGTGCCTGTATTTTCAGACCTATTTGAGTCATTTGGCGCAGAGCTACCTGCTTTTACTCAAA
TGGTAGTGGGTATGTCTGAGTGGATGAAAGCATGGTGGTTTATTTTAATTATTTTTATCGGTGGGGCTATTATCGGATTT
TCAGAAGCAAAAAAACGCTCTAAAAAATTCCGTGACTTTTTAGACCGTGCGGTATTAAAAGCACCAATTTTTGGCAATAT
TGCTTATCAAGCAATTATTGCGCGCTTTGCTCGTACCCTATCTACCACTTTTGCCGCTGGTGTACCTCTCATTGATGCGC
TAGATTCTACTGCTGGTGCGACCAACAATGTCGTGTTTTATAATGCCACTCAACAGGTCAAAAATGACGTTTCTACTGGT
CAGCAACTACAGTTCTCCATACGTTCAACCAATTTATTCCCAAGTCTCGTTATTCAAATGGTGGGTATCGGCGAAGAGTC
TGGTAGCTTGGAAGAAATGCTCGATAAAGTCGCTGTCTACTACGAAAACGAAGTCGACAATGCCGTTGATGGTTTGACCA
GCTTAATGGAACCTATGATCATGGCTGTACTGGGTGTATTAGTTGGTGGTCTGGTCATTGCGATGTACTTACCAATCTTC
CAAATGGGCTCAGTCGTAGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-398)

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	69.853	100	0.7
pilC	Acinetobacter baylyi ADP1	68.382	100	0.686
pilC	Pseudomonas stutzeri DSM 10701	64.051	97.052	0.622
pilC	Legionella pneumophila strain ERS1305867	56.642	98.034	0.555
pilC	Vibrio cholerae strain A1552	43.627	100	0.437
pilG	Neisseria gonorrhoeae MS11	43.687	97.297	0.425
pilG	Neisseria meningitidis 44/76-A	43.434	97.297	0.423
pilC	Vibrio campbellii strain DS40M4	41.646	98.526	0.41