Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   JS608_RS01590 Genome accession   NZ_CP071042
Coordinates   322794..323990 (-) Length   398 a.a.
NCBI ID   WP_015387437.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 317794..328990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS01570 (JS608_00317) - 318092..319414 (-) 1323 WP_079004963.1 ABC transporter substrate-binding protein -
  JS608_RS01575 (JS608_00318) - 319411..320418 (-) 1008 WP_014306163.1 ThiF family adenylyltransferase -
  JS608_RS01580 (JS608_00319) - 320650..322068 (-) 1419 WP_057080361.1 cell wall metabolism sensor histidine kinase WalK -
  JS608_RS01585 (JS608_00320) - 322065..322277 (-) 213 WP_057080362.1 winged helix-turn-helix domain-containing protein -
  JS608_RS01590 (JS608_00321) htrA 322794..323990 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  JS608_RS01595 (JS608_00322) vicX 324077..324871 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  JS608_RS01600 (JS608_00323) - 324886..325725 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  JS608_RS01605 (JS608_00324) yycH 325712..327070 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  JS608_RS01610 (JS608_00325) walK 327060..328895 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42674.52 Da        Isoelectric Point: 8.2793

>NTDB_id=475614 JS608_RS01590 WP_015387437.1 322794..323990(-) (htrA) [Bacillus amyloliquefaciens isolate ELA1901024]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLMPYWTGGDHGDSSKSTSRRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGHPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=475614 JS608_RS01590 WP_015387437.1 322794..323990(-) (htrA) [Bacillus amyloliquefaciens isolate ELA1901024]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGATACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGATGCCGTACTGGACAGGCGGAGACCATGGAGACAGCAGCA
AAAGCACCAGCCGGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCGGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACTGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGTTCGCGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCGGTA
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTCGGCAATTCTGATCAAGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGACTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGAGCGGTGC
CCGTTGACTCAAACGGCGACGGACATCCGGATTGGAATGCGGAAGTGCTGCAGACCGACGCCGCGATTAATCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATTTCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
AATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCCGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCAGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.687

99.497

0.435

  htrA Streptococcus mitis NCTC 12261

41.192

96.985

0.4

  htrA Streptococcus gordonii str. Challis substr. CH1

40.153

98.241

0.394