Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H7696_RS16100 Genome accession   NZ_CP060386
Coordinates   3414770..3415879 (-) Length   369 a.a.
NCBI ID   WP_186584570.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Vb1833     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3409770..3420879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS16070 (H7696_16070) hemF 3410230..3411147 (-) 918 WP_005379086.1 oxygen-dependent coproporphyrinogen oxidase -
  H7696_RS16075 (H7696_16075) - 3411195..3411752 (-) 558 WP_186584566.1 L-threonylcarbamoyladenylate synthase -
  H7696_RS16080 (H7696_16080) purE 3411952..3412437 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H7696_RS16085 (H7696_16085) - 3412442..3413575 (+) 1134 WP_186584568.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  H7696_RS16090 (H7696_16090) - 3413642..3414211 (-) 570 WP_017821580.1 type I DNA topoisomerase -
  H7696_RS16095 (H7696_16095) - 3414288..3414767 (-) 480 WP_005379074.1 DUF494 family protein -
  H7696_RS16100 (H7696_16100) dprA 3414770..3415879 (-) 1110 WP_186584570.1 DNA-processing protein DprA Machinery gene
  H7696_RS16105 (H7696_16105) - 3415863..3416957 (-) 1095 WP_186584572.1 LysM peptidoglycan-binding domain-containing protein -
  H7696_RS16110 (H7696_16110) def 3417096..3417614 (+) 519 WP_005379068.1 peptide deformylase -
  H7696_RS16115 (H7696_16115) fmt 3417648..3418595 (+) 948 WP_186584574.1 methionyl-tRNA formyltransferase -
  H7696_RS16120 (H7696_16120) rsmB 3418676..3419959 (+) 1284 WP_086047108.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39904.57 Da        Isoelectric Point: 6.8192

>NTDB_id=475592 H7696_RS16100 WP_186584570.1 3414770..3415879(-) (dprA) [Vibrio alginolyticus strain Vb1833]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPCYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRAIEHGALVSESRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=475592 H7696_RS16100 WP_186584570.1 3414770..3415879(-) (dprA) [Vibrio alginolyticus strain Vb1833]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTGCCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGAAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGCTATTGAACATGGGGCTTTGGTGTCTGAGTCTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.466
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.533

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.279

100

0.377