Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   H7683_RS23575 Genome accession   NZ_CP060288
Coordinates   5038940..5039263 (-) Length   107 a.a.
NCBI ID   WP_013715876.1    Uniprot ID   A0A379IU73
Organism   Pseudomonas mendocina strain CPS5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5033940..5044263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS23570 (H7683_23550) recC 5035360..5038776 (-) 3417 WP_209449979.1 exodeoxyribonuclease V subunit gamma -
  H7683_RS23575 (H7683_23555) comE1/comEA 5038940..5039263 (-) 324 WP_013715876.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7683_RS23580 (H7683_23560) - 5039531..5040385 (-) 855 WP_143499776.1 helix-turn-helix transcriptional regulator -
  H7683_RS23585 (H7683_23565) - 5040538..5040810 (+) 273 WP_061363591.1 hypothetical protein -
  H7683_RS23590 (H7683_23570) - 5040992..5042191 (+) 1200 WP_209449980.1 MFS transporter -
  H7683_RS23595 (H7683_23575) - 5043817..5043990 (+) 174 WP_209449981.1 hypothetical protein -
  H7683_RS23600 (H7683_23580) - 5043983..5044243 (+) 261 WP_209449982.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11212.75 Da        Isoelectric Point: 4.5680

>NTDB_id=475393 H7683_RS23575 WP_013715876.1 5038940..5039263(-) (comE1/comEA) [Pseudomonas mendocina strain CPS5]
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=475393 H7683_RS23575 WP_013715876.1 5038940..5039263(-) (comE1/comEA) [Pseudomonas mendocina strain CPS5]
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379IU73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

46.847

100

0.486
  comEA/comE1 Glaesserella parasuis strain SC1401

46.296

100

0.467
  comEA Vibrio cholerae C6706

50

89.72

0.449
  comEA Vibrio cholerae strain A1552

50

89.72

0.449
  comEA Legionella pneumophila str. Paris

43.434

92.523

0.402
  comEA Legionella pneumophila strain ERS1305867

43.434

92.523

0.402
  comEA Streptococcus thermophilus LMD-9

51.852

75.701

0.393
  comEA Acinetobacter baylyi ADP1

46.591

82.243

0.383
  comEA Vibrio parahaemolyticus RIMD 2210633

40.196

95.327

0.383