Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GWQ54_RS32005 Genome accession   NZ_CP070373
Coordinates   7236543..7237232 (-) Length   229 a.a.
NCBI ID   WP_161254412.1    Uniprot ID   A0ABQ2ZR49
Organism   Streptomyces sp. MBT27     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7231543..7242232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS31995 - 7233976..7234998 (+) 1023 WP_167153170.1 hypothetical protein -
  GWQ54_RS32000 clpX 7235074..7236366 (-) 1293 WP_161254410.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GWQ54_RS32005 clpP 7236543..7237232 (-) 690 WP_161254412.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GWQ54_RS32010 - 7237278..7237886 (-) 609 WP_167156210.1 ATP-dependent Clp protease proteolytic subunit -
  GWQ54_RS32015 tig 7238142..7239518 (-) 1377 WP_167153168.1 trigger factor -
  GWQ54_RS32030 - 7240282..7241787 (+) 1506 WP_167153166.1 hypothetical protein -
  GWQ54_RS32035 - 7241851..7242045 (-) 195 WP_100579694.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24827.17 Da        Isoelectric Point: 4.5723

>NTDB_id=474087 GWQ54_RS32005 WP_161254412.1 7236543..7237232(-) (clpP) [Streptomyces sp. MBT27]
MVNTPMSNFSGPSANASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQ
LSDLEIAANEILRMRTQLEDLLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVSTRKTTSAAAA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=474087 GWQ54_RS32005 WP_161254412.1 7236543..7237232(-) (clpP) [Streptomyces sp. MBT27]
ATGGTGAACACCCCCATGAGCAACTTCTCCGGCCCCTCGGCCAACGCGAGCGGCCTCTACACCGGCCCCCAGGTCGACAA
CCGCTACATCGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGG
AGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTGATGGCGCAGCTCCTGTGCCTGGAGTCG
ATGGACCCGGACCGCGACATCTCCATCTACATCAACAGCCCGGGTGGCTCCTTCACCGCCCTCACGGCGATCTACGACAC
GATGCAGTTCGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCG
GTACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCCTCGGGCGGCACCGGCCGCGAGCAG
CTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTCCGCATGCGTACGCAGCTGGAGGACCTGCTGGCCAAGCACTCGAC
GACGCCGATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGATGACGCGCTGGCCTACGGTCTGG
TCGACCAGATCGTTTCGACGCGCAAGACGACCTCCGCCGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

82.969

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.735

82.533

0.41
  clpP Streptococcus thermophilus LMG 18311

45.361

84.716

0.384
  clpP Streptococcus thermophilus LMD-9

45.361

84.716

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

83.406

0.38
  clpP Streptococcus pyogenes MGAS315

44.845

84.716

0.38
  clpP Streptococcus pyogenes JRS4

44.845

84.716

0.38
  clpP Streptococcus mutans UA159

45.789

82.969

0.38
  clpP Streptococcus pneumoniae Rx1

44.792

83.843

0.376
  clpP Streptococcus pneumoniae D39

44.792

83.843

0.376
  clpP Streptococcus pneumoniae R6

44.792

83.843

0.376
  clpP Streptococcus pneumoniae TIGR4

44.792

83.843

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

83.406

0.371