Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5404_RS22195 Genome accession   NZ_CP060088
Coordinates   3056591..3057121 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain TJA114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3051591..3062121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS22175 (H5404_22175) - 3051915..3052244 (-) 330 WP_140219698.1 MSHA biogenesis protein MshK -
  H5404_RS22180 (H5404_22180) gspM 3052237..3052887 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  H5404_RS22185 (H5404_22185) - 3052884..3054329 (-) 1446 WP_077671976.1 MSHA biogenesis protein MshI -
  H5404_RS22190 (H5404_22190) csrD 3054341..3056350 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H5404_RS22195 (H5404_22195) ssb 3056591..3057121 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H5404_RS22200 (H5404_22200) qstR 3057400..3058044 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  H5404_RS22205 (H5404_22205) galU 3058302..3059174 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=473904 H5404_RS22195 WP_005466625.1 3056591..3057121(-) (ssb) [Vibrio parahaemolyticus strain TJA114]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=473904 H5404_RS22195 WP_005466625.1 3056591..3057121(-) (ssb) [Vibrio parahaemolyticus strain TJA114]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAACAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483