Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R2866_RS01400 Genome accession   NC_017451
Coordinates   270975..271424 (+) Length   149 a.a.
NCBI ID   WP_005666683.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 265975..276424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS01380 (R2866_0276) rsmE 266439..267176 (-) 738 WP_005666674.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  R2866_RS01385 (R2866_0277) lnt 267229..268755 (-) 1527 WP_020909963.1 apolipoprotein N-acyltransferase -
  R2866_RS01390 (R2866_0278) corC 268778..269677 (-) 900 WP_005648977.1 CNNM family magnesium/cobalt transport protein CorC -
  R2866_RS01395 (R2866_0279) ampD 270309..270860 (-) 552 WP_005666680.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  R2866_RS01400 (R2866_0280) pilA 270975..271424 (+) 450 WP_005666683.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R2866_RS01405 (R2866_0281) pilB 271421..272815 (+) 1395 WP_005666685.1 GspE/PulE family protein Machinery gene
  R2866_RS01410 (R2866_0282) pilC 272812..274032 (+) 1221 WP_005666687.1 type II secretion system F family protein Machinery gene
  R2866_RS01415 (R2866_0283) pilD 274029..274721 (+) 693 WP_005666688.1 prepilin peptidase Machinery gene
  R2866_RS01420 (R2866_0284) rho 274776..276038 (-) 1263 WP_005666690.1 transcription termination factor Rho -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15556.89 Da        Isoelectric Point: 8.0922

>NTDB_id=47257 R2866_RS01400 WP_005666683.1 270975..271424(+) (pilA) [Haemophilus influenzae R2866]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVASVKTQSGGITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTEASLFPANFCGSVTQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=47257 R2866_RS01400 WP_005666683.1 270975..271424(+) (pilA) [Haemophilus influenzae R2866]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCTTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGTACAAATGAAACAACAAATTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAGCCTCAGTAAAAACGCAATCAGGTGGCATTACCGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGAGGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

95.973

100

0.96
  pilA Haemophilus influenzae Rd KW20

93.96

100

0.94
  pilA Glaesserella parasuis strain SC1401

53.691

100

0.537
  pilA2 Legionella pneumophila strain ERS1305867

40.136

98.658

0.396
  pilA Vibrio campbellii strain DS40M4

41.135

94.631

0.389
  pilA2 Legionella pneumophila str. Paris

40.288

93.289

0.376

Multiple sequence alignment