Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   H2R00_RS06040 Genome accession   NZ_CP059494
Coordinates   1228605..1229855 (-) Length   416 a.a.
NCBI ID   WP_182070664.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1223605..1234855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS06020 spoVS 1224143..1224403 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  H2R00_RS06025 - 1224605..1225402 (-) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  H2R00_RS06030 rny 1225489..1227048 (-) 1560 WP_075752751.1 ribonuclease Y -
  H2R00_RS06035 recA 1227390..1228436 (-) 1047 WP_043926427.1 recombinase RecA Machinery gene
  H2R00_RS06040 cinA 1228605..1229855 (-) 1251 WP_182070664.1 competence/damage-inducible protein A Machinery gene
  H2R00_RS06045 pgsA 1229875..1230456 (-) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H2R00_RS06050 - 1230523..1231425 (-) 903 WP_043926424.1 RodZ domain-containing protein -
  H2R00_RS06055 - 1231443..1232234 (-) 792 WP_003181917.1 YmfK family protein -
  H2R00_RS06060 - 1232482..1232739 (-) 258 WP_006638104.1 DUF3243 domain-containing protein -
  H2R00_RS06065 - 1232810..1233541 (-) 732 WP_182070665.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45641.97 Da        Isoelectric Point: 5.0686

>NTDB_id=470047 H2R00_RS06040 WP_182070664.1 1228605..1229855(-) (cinA) [Bacillus haynesii strain P19]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHEARFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=470047 H2R00_RS06040 WP_182070664.1 1228605..1229855(-) (cinA) [Bacillus haynesii strain P19]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCTGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGAACGCCTTA
AACAAGTTATTCAGACAGCACAGCAAAGGTCTGACTTCATCATTTTTTCAGGAGGCCTCGGACCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGCCCTCTTAAGCTTGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGCTCCGACGTTCTGCCGAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAAGCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTCATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTCAAGGGTGCT
GCGGTTCTTCGGCATCGGGGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATTGATGCGCAGACTAATCCGACAATCG
CCCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTCACGGCAAAGCATGCGGATCCGGCGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATCCTGGAGCGGGTCGGAGAGTTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCTGAATACTTCAAAGGCGGCGCCGTCTGCTACACTAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGCGCAAAAGAACTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGATCTGCGGTGCGGAAA
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.202

100

0.762
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.478
  cinA Streptococcus mitis SK321

47.017

100

0.474
  cinA Streptococcus pneumoniae R6

47.017

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.474
  cinA Streptococcus mitis NCTC 12261

47.017

100

0.474
  cinA Streptococcus pneumoniae D39

46.778

100

0.471
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392