Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   H1R75_RS09875 Genome accession   NZ_CP059471
Coordinates   1745715..1746509 (-) Length   264 a.a.
NCBI ID   WP_235686232.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740715..1751509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS08805 (H1R75_08805) rpe 1741149..1741811 (-) 663 WP_024343526.1 ribulose-phosphate 3-epimerase -
  H1R75_RS08810 (H1R75_08810) rsgA 1741818..1742690 (-) 873 WP_027968346.1 ribosome small subunit-dependent GTPase A -
  H1R75_RS08820 (H1R75_08820) comE/comE2 1742981..1743709 (-) 729 WP_024343524.1 LytR/AlgR family response regulator transcription factor Regulator
  H1R75_RS08825 (H1R75_08825) comD/comD3 1744331..1745722 (-) 1392 WP_182001375.1 GHKL domain-containing protein Regulator
  H1R75_RS09875 comD/comD3 1745715..1746509 (-) 795 WP_235686232.1 sensor histidine kinase Regulator
  H1R75_RS08835 (H1R75_08835) comD/comD3 1747107..1748489 (-) 1383 WP_235686233.1 GHKL domain-containing protein Regulator
  H1R75_RS08840 (H1R75_08840) - 1748490..1748687 (-) 198 WP_182001376.1 hypothetical protein -
  H1R75_RS08845 (H1R75_08845) - 1748849..1749142 (-) 294 WP_182001377.1 bacteriocin immunity protein -
  H1R75_RS08850 (H1R75_08850) - 1749173..1749478 (-) 306 WP_024344359.1 bacteriocin immunity protein -
  H1R75_RS08855 (H1R75_08855) - 1749498..1749794 (-) 297 WP_182001378.1 DUF3884 family protein -
  H1R75_RS09880 comD/comD1 1749969..1750691 (-) 723 WP_235686234.1 sensor histidine kinase Regulator
  H1R75_RS09885 - 1750676..1751290 (-) 615 WP_235686235.1 hypothetical protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30310.39 Da        Isoelectric Point: 4.8618

>NTDB_id=469860 H1R75_RS09875 WP_235686232.1 1745715..1746509(-) (comD/comD3) [Streptococcus equinus strain MDC1]
MSTNRNIYRLTILVYFVLLFAFLFYLNFRHGQERKEELLRNQEMELAALENYSKHVESLYQEVRSFRHDYANVLMSLKVG
IDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISDSAVKSLMSAKFLEAENRGIEISLEVAEPMKNPAIPLISYIR
ILSILFDNAIEGALESENPKIAVANFYQDGDFVFIIENSTKEKSVDLSKIFQRGYSTKGDNRGLGLATLVDFQDDYENLS
VGTSSFDYKFTQVVRVYEGRRVDD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=469860 H1R75_RS09875 WP_235686232.1 1745715..1746509(-) (comD/comD3) [Streptococcus equinus strain MDC1]
ATGTCAACGAATAGAAATATTTATAGGTTGACCATCCTTGTTTACTTCGTTCTCCTTTTTGCCTTCCTCTTCTATCTTAA
CTTCCGTCACGGGCAGGAGCGAAAAGAAGAATTGCTCCGCAATCAGGAAATGGAGCTTGCGGCTTTGGAAAATTACAGCA
AGCACGTAGAGAGCTTGTATCAAGAAGTGCGCAGTTTTCGCCATGATTATGCCAACGTTTTGATGAGTTTAAAGGTCGGC
ATTGATCAAGGTGATCTTGATAATATCAAGAAAATTTACGAAGAAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAA
TAAGTTTGACTTGACGCGACTAGCAAATATTTCAGACAGTGCCGTCAAAAGTCTCATGTCGGCTAAATTTTTGGAGGCTG
AAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGAGCCAATGAAAAATCCAGCTATTCCACTGATTTCTTACATTCGA
ATTTTATCGATTTTGTTTGATAACGCTATCGAAGGAGCCTTAGAGTCGGAAAATCCCAAAATCGCAGTAGCGAATTTTTA
CCAAGATGGAGATTTTGTGTTTATCATTGAAAATTCGACTAAGGAAAAATCTGTAGATTTATCTAAAATTTTCCAACGTG
GTTACTCTACAAAAGGTGATAATCGCGGACTTGGGCTTGCGACGCTTGTTGATTTTCAGGATGATTACGAAAATTTGTCA
GTTGGAACCAGCAGTTTTGATTACAAATTTACGCAAGTTGTGAGAGTTTATGAGGGGAGAAGAGTAGATGATTGA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(159-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

84.942

98.106

0.833
  comD/comD2 Streptococcus equinus JB1

82.031

96.97

0.795
  comD/comD1 Streptococcus equinus JB1

52.838

86.742

0.458
  comD/blpH Streptococcus mutans UA159

41.935

93.939

0.394