Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JSQ86_RS09185 Genome accession   NZ_CP069707
Coordinates   1902527..1903954 (-) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain E41     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897527..1908954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ86_RS09155 (JSQ86_09155) yeeZ 1897582..1898406 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JSQ86_RS09160 (JSQ86_09160) yeeY 1898452..1899381 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JSQ86_RS09165 (JSQ86_09165) yoeI 1899596..1899658 (+) 63 WP_010723108.1 membrane protein YoeI -
  JSQ86_RS09170 (JSQ86_09170) plaP 1899648..1901006 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JSQ86_RS09175 (JSQ86_09175) tsuA 1901185..1902243 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  JSQ86_RS09180 (JSQ86_09180) tsuB 1902257..1902484 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JSQ86_RS09185 (JSQ86_09185) sbcB 1902527..1903954 (-) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  JSQ86_RS09190 (JSQ86_09190) dacD 1904163..1905329 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JSQ86_RS09195 (JSQ86_09195) sbmC 1905448..1905921 (+) 474 WP_113078645.1 DNA gyrase inhibitor SbmC -
  JSQ86_RS09200 (JSQ86_09200) yeeA 1906119..1907177 (+) 1059 WP_001200891.1 FUSC family protein -
  JSQ86_RS09205 (JSQ86_09205) tmaR 1907349..1907678 (+) 330 WP_000450409.1 DUF496 family protein -
  JSQ86_RS09210 (JSQ86_09210) - 1907779..1908222 (-) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  JSQ86_RS09215 (JSQ86_09215) pduU 1908227..1908577 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=469851 JSQ86_RS09185 WP_001402309.1 1902527..1903954(-) (sbcB) [Escherichia coli strain E41]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=469851 JSQ86_RS09185 WP_001402309.1 1902527..1903954(-) (sbcB) [Escherichia coli strain E41]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579