Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   H1R75_RS08835 Genome accession   NZ_CP059471
Coordinates   1747107..1748489 (-) Length   460 a.a.
NCBI ID   WP_235686233.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742107..1753489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS08820 (H1R75_08820) comE/comE2 1742981..1743709 (-) 729 WP_024343524.1 LytR/AlgR family response regulator transcription factor Regulator
  H1R75_RS08825 (H1R75_08825) comD/comD3 1744331..1745722 (-) 1392 WP_182001375.1 GHKL domain-containing protein Regulator
  H1R75_RS09875 comD/comD3 1745715..1746509 (-) 795 WP_235686232.1 sensor histidine kinase Regulator
  H1R75_RS08835 (H1R75_08835) comD/comD3 1747107..1748489 (-) 1383 WP_235686233.1 GHKL domain-containing protein Regulator
  H1R75_RS08840 (H1R75_08840) - 1748490..1748687 (-) 198 WP_182001376.1 hypothetical protein -
  H1R75_RS08845 (H1R75_08845) - 1748849..1749142 (-) 294 WP_182001377.1 bacteriocin immunity protein -
  H1R75_RS08850 (H1R75_08850) - 1749173..1749478 (-) 306 WP_024344359.1 bacteriocin immunity protein -
  H1R75_RS08855 (H1R75_08855) - 1749498..1749794 (-) 297 WP_182001378.1 DUF3884 family protein -
  H1R75_RS09880 comD/comD1 1749969..1750691 (-) 723 WP_235686234.1 sensor histidine kinase Regulator
  H1R75_RS09885 - 1750676..1751290 (-) 615 WP_235686235.1 hypothetical protein -
  H1R75_RS08865 (H1R75_08865) comE/comE1 1751295..1752026 (-) 732 WP_182001379.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52791.59 Da        Isoelectric Point: 6.1829

>NTDB_id=469851 H1R75_RS08835 WP_235686233.1 1747107..1748489(-) (comD/comD3) [Streptococcus equinus strain MDC1]
MRMIFMEVLGVLMNFSSFLILGVLFQQITKNKLTLGEWIFGILFIQIFSLGLAYSFVYRFNIAVLITKDVAPAACLMLIS
YHHNPRISFRYHLFYALYPINVHIILQRVYAYLLMMLFSIEITPRFDTAPIVTIIATIIAIFIPPVLYYLISKWLNIDIS
NVRKTLKNYLSSGVLTIVNILMVVYYFGNDYLALEVPSDSPILKIIVRTGAFIYLFLLFAFLFYLNFRHGQEQKNELLRN
QEMELAALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISNSA
VKSLMSAKFLEAENRGIEISLEVAEPMKNPAIPLISYIRILSILFDNAIEAALESENPKIAVANFYQDGDFVFIIENSTK
EKSVDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVETSSLDYKFTQVVRVYEGEN

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=469851 H1R75_RS08835 WP_235686233.1 1747107..1748489(-) (comD/comD3) [Streptococcus equinus strain MDC1]
ATGCGAATGATTTTTATGGAAGTATTAGGGGTTCTGATGAATTTTTCGTCTTTTTTAATACTAGGAGTTTTATTTCAGCA
GATAACTAAAAATAAACTCACTTTAGGAGAGTGGATTTTTGGAATATTATTTATTCAAATTTTTTCTCTTGGGCTTGCCT
ACAGTTTTGTCTATCGTTTTAATATTGCTGTTCTAATAACTAAGGATGTTGCGCCAGCAGCCTGTTTGATGTTAATTTCA
TATCATCATAATCCTAGAATTAGTTTTAGGTATCATCTTTTTTATGCTTTATATCCTATTAATGTTCACATAATTTTACA
AAGAGTATATGCCTATTTATTAATGATGCTCTTTTCAATTGAAATTACTCCTCGGTTTGACACTGCGCCGATAGTTACAA
TTATTGCTACAATTATCGCTATTTTTATACCGCCAGTTTTATATTATTTGATATCAAAGTGGCTTAATATTGATATTTCA
AATGTTCGAAAAACATTAAAAAATTATCTAAGTTCAGGAGTTTTGACGATTGTTAATATTTTAATGGTGGTTTATTATTT
CGGAAATGATTATCTTGCTTTAGAGGTACCATCAGATTCTCCAATTTTAAAAATAATTGTGAGAACTGGTGCTTTTATCT
ATTTATTCCTCCTTTTTGCATTCCTCTTCTATCTTAATTTCCGTCATGGGCAGGAGCAAAAAAATGAGCTGCTTCGCAAT
CAGGAAATGGAGCTTGCGGCTTTGGAAAATTACAGCAAGCACGTGGAGAGTCTGTATCAAGAAGTGCGCAGCTTTCGCCA
TGATTATGCCAACGTTTTGATGAGTTTAAAGGTCGGCATTGATCAAGGTGATCTTGATAATATCAAGAAAATTTACGAAG
AAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAATAAGTTTGATTTGACGCGATTAGCAAATATTTCAAACAGTGCT
GTCAAGAGCCTCATGTCAGCCAAATTTTTGGAGGCTGAAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGAGCCAAT
GAAAAATCCAGCTATTCCACTGATTTCTTACATTCGAATCTTGTCGATTCTGTTTGACAATGCCATTGAGGCTGCTTTAG
AGTCGGAAAATCCCAAAATAGCAGTAGCGAATTTTTACCAAGATGGAGATTTTGTGTTTATCATTGAAAATTCGACTAAG
GAAAAATCTGTGGATTTATCCAAGATTTTCCAGCGTGGGTACTCAACAAAAGGTGAGAATCGCGGACTTGGGCTTGCGAC
GCTTGTTGATTTTCAGGATGATTATGAAAATTTGTCAGTTGAAACCAGCAGTCTCGATTACAAATTTACACAAGTTGTGA
GAGTTTATGAGGGGGAAAATTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(358-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

68.64

99.13

0.68
  comD/comD2 Streptococcus equinus JB1

76.341

68.913

0.526