Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   H1R75_RS08825 Genome accession   NZ_CP059471
Coordinates   1744331..1745722 (-) Length   463 a.a.
NCBI ID   WP_182001375.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739331..1750722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS08800 (H1R75_08800) - 1740524..1741156 (-) 633 WP_024343527.1 thiamine diphosphokinase -
  H1R75_RS08805 (H1R75_08805) rpe 1741149..1741811 (-) 663 WP_024343526.1 ribulose-phosphate 3-epimerase -
  H1R75_RS08810 (H1R75_08810) rsgA 1741818..1742690 (-) 873 WP_027968346.1 ribosome small subunit-dependent GTPase A -
  H1R75_RS08820 (H1R75_08820) comE/comE2 1742981..1743709 (-) 729 WP_024343524.1 LytR/AlgR family response regulator transcription factor Regulator
  H1R75_RS08825 (H1R75_08825) comD/comD3 1744331..1745722 (-) 1392 WP_182001375.1 GHKL domain-containing protein Regulator
  H1R75_RS09875 comD/comD3 1745715..1746509 (-) 795 WP_235686232.1 sensor histidine kinase Regulator
  H1R75_RS08835 (H1R75_08835) comD/comD3 1747107..1748489 (-) 1383 WP_235686233.1 GHKL domain-containing protein Regulator
  H1R75_RS08840 (H1R75_08840) - 1748490..1748687 (-) 198 WP_182001376.1 hypothetical protein -
  H1R75_RS08845 (H1R75_08845) - 1748849..1749142 (-) 294 WP_182001377.1 bacteriocin immunity protein -
  H1R75_RS08850 (H1R75_08850) - 1749173..1749478 (-) 306 WP_024344359.1 bacteriocin immunity protein -
  H1R75_RS08855 (H1R75_08855) - 1749498..1749794 (-) 297 WP_182001378.1 DUF3884 family protein -
  H1R75_RS09880 comD/comD1 1749969..1750691 (-) 723 WP_235686234.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 53102.98 Da        Isoelectric Point: 6.5134

>NTDB_id=469850 H1R75_RS08825 WP_182001375.1 1744331..1745722(-) (comD/comD3) [Streptococcus equinus strain MDC1]
MIEIIRFIVTMFFNFIGFIILGLLFQQITKTKITILEWFAITMLVQVGSIAFGALTGNTLKVGLLVIKDIVVILSLMLIS
YRHNPELEIRYHVFYALYPNNLYMILQGVYGYTMMGIFSIKITPMVGQSKSWGVWLITITSIFAPPIFYYLLSKWLNIDI
SNIRKSIKHYISSNTLRVVNVLMLLFYPGMECFAVIAPFEKMSTNRNIYRLTILVYFVLLFAFLFYLNFRHGQEQKEELL
RNQEMELAALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEGITADSAKLVKNNKFDLTRLANISD
SAVKSLMSAKFLEAENRGIEISLEVAEPMKNPAIPLISYIRILSILFDNAIEAALESENPKIAVANFYQDGDFVFIIENS
TREKSVDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVETSSLDYKFTQVVRVYEGENG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=469850 H1R75_RS08825 WP_182001375.1 1744331..1745722(-) (comD/comD3) [Streptococcus equinus strain MDC1]
ATGATTGAAATTATTAGATTTATTGTTACAATGTTTTTCAATTTTATAGGATTTATTATACTAGGTCTTTTATTCCAGCA
AATAACTAAAACTAAAATAACTATATTGGAATGGTTTGCAATAACTATGTTAGTTCAAGTTGGTTCTATTGCCTTTGGTG
CTCTAACTGGTAATACTTTAAAAGTAGGTTTATTGGTTATAAAAGATATTGTTGTTATTTTAAGTTTGATGCTAATATCA
TACAGACATAATCCAGAACTAGAAATCAGATATCATGTTTTTTATGCCTTGTATCCAAATAATCTTTATATGATTTTGCA
AGGGGTATATGGATATACAATGATGGGGATTTTTTCGATAAAAATAACTCCAATGGTAGGTCAATCAAAATCATGGGGAG
TTTGGTTAATTACTATTACAAGTATTTTTGCTCCGCCGATTTTTTATTACCTGCTTTCAAAATGGTTAAATATTGATATT
TCCAATATTAGAAAGAGTATTAAGCATTATATTAGTTCAAACACACTGAGGGTTGTAAATGTTTTAATGTTGCTTTTTTA
TCCAGGAATGGAGTGTTTTGCGGTGATAGCACCGTTTGAAAAAATGTCAACGAATAGAAATATTTATAGGTTGACCATCC
TTGTTTACTTCGTTCTCCTTTTTGCCTTCCTCTTCTATCTTAACTTCCGTCACGGGCAGGAGCAGAAAGAAGAATTACTT
CGCAATCAGGAAATGGAGCTTGCGGCTTTAGAAAATTACAGCAAGCACGTGGAGAGTCTGTACCAAGAAGTGCGCAGTTT
TCGCCATGATTATGCCAACGTTTTGATGAGTTTAAAGGTCGGCATTGATCAAGGTGATCTTGATAATATCAAGAAAATTT
ACGAAGGAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAATAAGTTTGATTTGACGCGATTAGCAAATATTTCAGAC
AGTGCCGTCAAAAGCCTCATGTCAGCTAAATTTTTAGAAGCTGAAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGA
GCCAATGAAAAATCCAGCTATTCCACTGATTTCTTACATTCGAATCTTGTCGATTCTGTTTGACAATGCCATTGAGGCTG
CTTTAGAGTCGGAAAATCCCAAAATTGCAGTAGCGAATTTTTATCAAGACGGAGATTTTGTGTTTATCATTGAAAATTCG
ACTAGGGAAAAATCTGTAGATTTATCCAAAATTTTCCAACGCGGTTACTCTACAAAAGGTGAGAATCGCGGTCTGGGTCT
TGCAACATTGGTTGATTTTCAGGATGATTATGAAAATTTGTCAGTTGAAACCAGCAGTCTCGATTACAAATTTACACAAG
TTGTGAGAGTTTATGAGGGAGAAAATGGCTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

72.826

99.352

0.724
  comD/comD2 Streptococcus equinus JB1

73.885

67.819

0.501