Detailed information NTG0469799

Bioinformatically predicted

Overview

• Name: comYA
• Type: Machinery gene
• Locus tag: H1R75_RS00670
• Genome accession: NZ_CP059471
• Coordinates: 101377..102318 (+)
• Length: 313 a.a.
• NCBI ID: WP_027968018.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain MDC1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 96377..107318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1R75_RS00660 (H1R75_00660)	rpoC	97135..100773 (+)	3639	WP_033151924.1	DNA-directed RNA polymerase subunit beta'	-
H1R75_RS00665 (H1R75_00665)	-	100940..101308 (+)	369	WP_182001454.1	DUF1033 family protein	-
H1R75_RS00670 (H1R75_00670)	comYA	101377..102318 (+)	942	WP_027968018.1	competence type IV pilus ATPase ComGA	Machinery gene
H1R75_RS00675 (H1R75_00675)	comYB	102242..103285 (+)	1044	WP_182001824.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1R75_RS00680 (H1R75_00680)	-	103364..104800 (-)	1437	WP_182001825.1	recombinase family protein	-
H1R75_RS00685 (H1R75_00685)	-	104939..105679 (-)	741	WP_182001455.1	hypothetical protein	-
H1R75_RS00690 (H1R75_00690)	-	105730..106464 (-)	735	WP_182001456.1	XRE family transcriptional regulator	-
H1R75_RS00695 (H1R75_00695)	-	106657..106863 (+)	207	WP_039697363.1	helix-turn-helix transcriptional regulator	-
H1R75_RS00700 (H1R75_00700)	-	107118..107261 (+)	144	WP_180367884.1	BOW99_gp33 family protein	-

Sequence

Protein

• Length: 313 a.a.
• Molecular weight: 35736.86 Da
• Isoelectric Point: 5.7732

>NTDB_id=469799 H1R75_RS00670 WP_027968018.1 101377..102318(+) (comYA) [Streptococcus equinus strain MDC1]
MIQEKAKQLIRDAVEKNAQDIYIIPKAENYEIYQRIGEKRQFIQEVATDEMTSLISHFKFVAGMNVGEKRRSQLGSCDYA
FADDEEISLRLSSVGDYRGRESLVIRLLYSGRHDLQYWFDGMRNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPGK
QVITIEDPVEIKQDNMLQLQLNDEIGMTYDNLIKLSLRHRPDILIIGEIRDSETARAVIRASLTGVLVFSTIHAKSIPGV
YARLLELGVSRQELENSLRAIVYQRLIGGGGVVDFAKRDFEQYPPTRWNEQIDSLARDGHISFEEAKIEKIAL

Nucleotide

• Length: 942 bp

>NTDB_id=469799 H1R75_RS00670 WP_027968018.1 101377..102318(+) (comYA) [Streptococcus equinus strain MDC1]
ATGATTCAGGAAAAAGCAAAGCAGCTCATTAGAGATGCGGTTGAAAAGAATGCTCAGGATATCTATATTATTCCAAAGGC
AGAAAACTATGAGATTTATCAACGAATTGGTGAGAAACGTCAGTTTATTCAAGAAGTTGCTACTGATGAAATGACAAGCT
TGATTAGTCACTTTAAATTTGTAGCTGGGATGAATGTTGGTGAAAAGCGTCGTAGTCAGCTTGGTTCTTGTGACTATGCT
TTTGCAGATGATGAGGAGATTTCACTGCGCTTGTCTAGTGTGGGTGATTATCGTGGGCGTGAAAGTCTGGTCATTAGGCT
CCTTTATTCAGGTCGTCATGATTTGCAGTATTGGTTTGATGGAATGAGAAATATTTTAGAGGCCATTGACAGTAGGGGAC
TTTACCTTTTTTCCGGTCCGGTAGGGAGTGGGAAAACCACTCTCATGTACCAATTAGTTCGTGAAAAATTTCCTGGAAAG
CAGGTGATTACGATTGAAGACCCTGTTGAGATAAAACAAGACAATATGTTGCAATTGCAGTTGAATGATGAAATCGGGAT
GACTTATGATAATCTTATCAAGCTATCGCTTCGTCATAGACCTGATATTTTGATTATTGGTGAGATTCGTGATAGTGAGA
CAGCGCGTGCGGTTATTAGAGCTAGTCTGACAGGAGTCCTTGTTTTTTCAACTATTCATGCGAAGAGTATACCTGGCGTT
TATGCTAGGTTATTAGAATTGGGTGTTAGTAGGCAGGAACTTGAAAATAGCTTGCGCGCTATCGTTTATCAACGATTAAT
TGGTGGTGGAGGTGTAGTTGATTTTGCCAAAAGAGATTTTGAGCAGTATCCCCCAACAAGGTGGAATGAGCAAATTGATA
GCCTTGCTCGAGACGGACATATCAGTTTTGAAGAGGCAAAAATCGAAAAAATTGCCCTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYA	Streptococcus mutans UA159	71.061	99.361	0.706
comYA	Streptococcus mutans UA140	70.74	99.361	0.703
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	68.71	99.042	0.681
comYA	Streptococcus gordonii str. Challis substr. CH1	65.916	99.361	0.655
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	64.103	99.681	0.639
comGA/cglA/cilD	Streptococcus pneumoniae D39	64.103	99.681	0.639
comGA/cglA/cilD	Streptococcus pneumoniae R6	64.103	99.681	0.639
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	64.103	99.681	0.639
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	64.103	99.681	0.639
comGA	Lactococcus lactis subsp. cremoris KW2	54.952	100	0.55
comGA	Latilactobacillus sakei subsp. sakei 23K	42.701	87.54	0.374