Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOLKNPGA_RS09225 Genome accession   NZ_CP059400
Coordinates   2098716..2099936 (-) Length   406 a.a.
NCBI ID   WP_182349641.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093716..2104936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS09200 (FOLKNPGA_01871) - 2093827..2094276 (-) 450 WP_182349636.1 CBS domain-containing protein -
  FOLKNPGA_RS09205 (FOLKNPGA_01872) - 2094476..2095687 (-) 1212 WP_182349637.1 sterol desaturase family protein -
  FOLKNPGA_RS09210 (FOLKNPGA_01873) - 2095821..2097005 (-) 1185 WP_182349638.1 aminotransferase class V-fold PLP-dependent enzyme -
  FOLKNPGA_RS09215 (FOLKNPGA_01874) - 2097037..2097804 (-) 768 WP_182349639.1 HAD family hydrolase -
  FOLKNPGA_RS09220 (FOLKNPGA_01875) - 2097826..2098686 (-) 861 WP_182349640.1 A24 family peptidase -
  FOLKNPGA_RS09225 (FOLKNPGA_01876) pilC 2098716..2099936 (-) 1221 WP_182349641.1 type II secretion system F family protein Machinery gene
  FOLKNPGA_RS09230 (FOLKNPGA_01877) pilB 2099947..2101665 (-) 1719 WP_182349642.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOLKNPGA_RS09235 (FOLKNPGA_01878) - 2101919..2102710 (+) 792 WP_182349643.1 methyltransferase domain-containing protein -
  FOLKNPGA_RS09240 (FOLKNPGA_01879) - 2102811..2103392 (-) 582 WP_182349644.1 hypothetical protein -
  FOLKNPGA_RS09245 (FOLKNPGA_01880) - 2103573..2103899 (+) 327 WP_182349645.1 DUF1820 family protein -
  FOLKNPGA_RS09250 (FOLKNPGA_01881) - 2103945..2104505 (+) 561 WP_182349646.1 hypoxanthine-guanine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44304.27 Da        Isoelectric Point: 9.9527

>NTDB_id=469381 FOLKNPGA_RS09225 WP_182349641.1 2098716..2099936(-) (pilC) [Legionella sp. PC1000]
MKKNANTTLTFHYTGVNKAAQKINGDIEARSLALAKVELRRQGITVNKIAKKRAPLVSLKSKKVKSGDITVFSRQLATMI
ESGIPLVQSFDIVAKGQSNKRFKELIEHIKSDVETGLTLSEALKKYPAHFNDLFCNLVEAGEKSGSLDIMLDKIATYKEK
IETIKKKIKKALTYPMAVMVVAFIVTIGLLMFVVPQFESLFKGFGAELPAMTQAVVSMSKFVQSYWYLIFGALAGGIYAF
IYALKHSPQFAQSVDKTLLKLPVIGPIIEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFAKATDTIREEVSTG
QQMNKAMENTQLFPNMVVQMVSIGEESGSLEKMLSKVADFYEEDVDNAVDSLSSLLEPVIMSILGILVGGLVVAMYLPIF
KLGTAI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=469381 FOLKNPGA_RS09225 WP_182349641.1 2098716..2099936(-) (pilC) [Legionella sp. PC1000]
ATGAAAAAAAATGCCAATACTACTTTAACCTTTCATTACACAGGCGTTAATAAAGCGGCTCAAAAAATAAATGGGGATAT
TGAAGCCAGAAGTCTTGCTTTAGCTAAAGTTGAGTTGCGCAGACAAGGAATTACCGTTAATAAAATTGCTAAAAAACGTG
CACCTCTTGTCAGTTTAAAGAGCAAAAAAGTGAAGTCTGGAGATATTACGGTATTTAGTCGTCAATTAGCGACAATGATT
GAATCTGGGATACCTTTAGTGCAATCCTTTGATATCGTTGCGAAAGGACAATCGAATAAACGGTTTAAAGAATTAATTGA
ACATATTAAAAGTGATGTTGAAACAGGATTAACACTTTCTGAGGCACTGAAGAAATATCCTGCACATTTTAATGATTTAT
TCTGCAATTTAGTGGAAGCTGGTGAAAAATCAGGCTCTCTTGATATTATGTTGGATAAGATCGCTACGTATAAAGAAAAA
ATAGAAACAATAAAAAAGAAAATTAAAAAAGCTTTAACCTATCCTATGGCGGTAATGGTTGTTGCTTTCATCGTTACAAT
TGGCTTACTTATGTTCGTTGTCCCACAATTTGAGTCTTTATTTAAGGGCTTTGGCGCGGAGTTGCCTGCTATGACTCAAG
CAGTTGTGAGTATGTCAAAATTTGTCCAATCCTATTGGTATTTAATTTTTGGAGCCTTGGCTGGTGGTATATATGCGTTT
ATTTATGCATTAAAACACTCGCCTCAATTTGCGCAAAGTGTTGATAAAACGTTGTTAAAACTACCTGTAATAGGTCCTAT
TATTGAGAAAGCTGCGATCGCTCGTTTTGCAAGGACGCTATCAATTACTTTTGCTGCTGGCTTGCCTCTAGTTGAGGCAC
TTAAATCTGTAGCAGGCGCTACAGGAAACATTATTTTTGCTAAAGCCACTGACACAATTAGGGAAGAGGTATCTACAGGT
CAACAAATGAATAAGGCGATGGAGAATACCCAATTATTTCCAAATATGGTGGTCCAGATGGTTTCAATTGGTGAGGAATC
AGGTTCATTAGAGAAAATGTTAAGTAAGGTTGCTGATTTTTATGAAGAAGATGTTGATAACGCAGTCGACTCACTCAGCA
GTTTATTAGAACCTGTTATTATGAGTATTTTAGGTATCTTGGTAGGCGGACTTGTCGTTGCAATGTATCTGCCTATCTTT
AAACTGGGAACGGCAATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

78.325

100

0.783
  pilC Acinetobacter baumannii D1279779

54.815

99.754

0.547
  pilC Acinetobacter baylyi ADP1

53.401

97.783

0.522
  pilC Pseudomonas stutzeri DSM 10701

50.985

100

0.51
  pilG Neisseria meningitidis 44/76-A

44.552

100

0.453
  pilG Neisseria gonorrhoeae MS11

44.31

100

0.451
  pilC Vibrio cholerae strain A1552

43.878

96.552

0.424
  pilC Vibrio campbellii strain DS40M4

38.424

100

0.384