Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS055_RS04860 Genome accession   NZ_CP059243
Coordinates   948542..949690 (-) Length   382 a.a.
NCBI ID   WP_409042124.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0002     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 943542..954690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS055_RS04830 (HS055_04780) rplK 943803..944183 (-) 381 WP_240017523.1 50S ribosomal protein L11 -
  HS055_RS04835 (HS055_04785) nusG 944463..945029 (-) 567 WP_409042123.1 transcription termination/antitermination protein NusG -
  HS055_RS04840 (HS055_04790) secE 945031..945444 (-) 414 WP_006248761.1 preprotein translocase subunit SecE -
  HS055_RS04845 (HS055_04795) - 945557..946582 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  HS055_RS04850 (HS055_04800) - 946813..947082 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS055_RS04855 (HS055_04805) - 947095..948447 (+) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS055_RS04860 (HS055_04810) dprA 948542..949690 (-) 1149 WP_409042124.1 DNA-processing protein DprA Machinery gene
  HS055_RS04865 (HS055_04815) def 949779..950291 (+) 513 WP_006248765.1 peptide deformylase -
  HS055_RS04870 (HS055_04820) rfaD 950385..951314 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS055_RS04875 (HS055_04825) fabA 951382..951912 (-) 531 WP_240020346.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS055_RS04880 (HS055_04830) - 952025..953662 (-) 1638 WP_006248768.1 AAA family ATPase -
  HS055_RS04885 (HS055_04835) matP 953755..954204 (+) 450 WP_409038111.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42516.60 Da        Isoelectric Point: 5.2272

>NTDB_id=468097 HS055_RS04860 WP_409042124.1 948542..949690(-) (dprA) [Mannheimia haemolytica strain 0002]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNRPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468097 HS055_RS04860 WP_409042124.1 948542..949690(-) (dprA) [Mannheimia haemolytica strain 0002]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCGGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.351

99.215

0.728
  dprA Haemophilus influenzae Rd KW20

51.014

90.314

0.461
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364