Detailed information    

insolico Bioinformatically predicted

Overview


Name   comD/blpH   Type   Regulator
Locus tag   I6J38_RS10020 Genome accession   NZ_CP069558
Coordinates   158420..159241 (-) Length   273 a.a.
NCBI ID   WP_235043796.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1208     
Function   phosphorylation of ComE; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 153420..164241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J38_RS00775 (I6J38_00775) - 153749..154123 (-) 375 WP_022525583.1 hypothetical protein -
  I6J38_RS00780 (I6J38_00780) comA/nlmT 154607..156757 (+) 2151 WP_006267089.1 peptide cleavage/export ABC transporter Regulator
  I6J38_RS00785 (I6J38_00785) - 156768..158129 (+) 1362 WP_020999319.1 bacteriocin secretion accessory protein -
  I6J38_RS00790 (I6J38_00790) - 158226..158375 (+) 150 WP_003037249.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  I6J38_RS10020 comD/blpH 158420..159241 (-) 822 WP_235043796.1 sensor histidine kinase Regulator
  I6J38_RS00800 (I6J38_00800) comE/blpR 159732..160478 (-) 747 WP_041786327.1 response regulator transcription factor Regulator
  I6J38_RS00805 (I6J38_00805) - 160647..161360 (-) 714 WP_022525581.1 CPBP family intramembrane glutamic endopeptidase -
  I6J38_RS00810 (I6J38_00810) - 161592..161813 (+) 222 WP_006267535.1 Blp family class II bacteriocin -
  I6J38_RS00815 (I6J38_00815) - 162490..162810 (+) 321 WP_006267159.1 hypothetical protein -
  I6J38_RS00820 (I6J38_00820) - 162818..163051 (+) 234 WP_003025420.1 garvicin Q family class II bacteriocin -
  I6J38_RS00825 (I6J38_00825) - 163103..163393 (+) 291 WP_006267076.1 bacteriocin immunity protein -
  I6J38_RS00830 (I6J38_00830) - 163543..163863 (+) 321 WP_006267110.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 31282.82 Da        Isoelectric Point: 6.1166

>NTDB_id=468192 I6J38_RS10020 WP_235043796.1 158420..159241(-) (comD/blpH) [Streptococcus constellatus strain FDAARGOS_1208]
MIVYHLIVQVLSYLENESNIQTLNFRESLVVLYLILFVSVANYLDRHLRERIQNDLMLQKDLQLKNMENYSHHIEELYTE
VRSFRHDYANILTTLKLGIEQNDIGIVKNVYHSVLKDSNKRFRNPKYDIGRLVHIKNDALKSLLAAKFAQAQEHNVSVSL
EVPEDICPQGMELIDFITIVSILCDNAIEATTPTMTIAYVLSENKQVFSIENAIKEEHIDMSYIFDAGVSSKGSGRGIGL
SNVLAILDRYPNVSLTSASQNYRFQHVLEIHLN

Nucleotide


Download         Length: 822 bp        

>NTDB_id=468192 I6J38_RS10020 WP_235043796.1 158420..159241(-) (comD/blpH) [Streptococcus constellatus strain FDAARGOS_1208]
ATGATTGTTTATCATCTTATTGTTCAAGTTCTATCTTATTTAGAAAACGAGAGTAACATACAGACACTAAATTTTAGAGA
AAGTTTAGTAGTTCTTTATCTTATCCTTTTTGTGAGTGTTGCCAATTATTTAGACCGTCATTTACGAGAGAGAATCCAAA
ATGATTTAATGCTTCAAAAAGATTTACAGTTAAAAAATATGGAAAACTACAGTCATCACATTGAGGAATTGTACACAGAA
GTTCGGAGCTTTCGGCATGATTACGCTAATATTTTAACAACCTTGAAATTAGGAATTGAGCAAAATGATATAGGCATTGT
AAAGAATGTCTATCATTCTGTTTTGAAAGATTCCAATAAGCGTTTTCGCAATCCCAAGTATGATATTGGACGGTTAGTCC
ATATCAAAAACGATGCCTTAAAAAGCCTGCTAGCTGCTAAATTTGCACAAGCTCAAGAGCATAATGTATCCGTTTCATTG
GAGGTTCCAGAAGATATTTGTCCACAAGGAATGGAATTAATTGACTTTATCACCATTGTCTCCATTTTGTGTGATAATGC
GATTGAAGCTACCACTCCAACTATGACGATTGCTTATGTTTTGTCAGAAAACAAGCAGGTATTCTCCATTGAAAATGCTA
TAAAAGAAGAGCATATAGACATGTCTTATATTTTTGATGCGGGAGTTAGTTCTAAAGGATCTGGGCGAGGAATTGGATTA
TCAAATGTCTTAGCAATTCTGGATCGATATCCAAATGTTTCTCTTACTAGCGCTAGTCAAAATTATCGTTTCCAGCATGT
CCTTGAGATTCATCTGAATTAA

Domains


Predicted by InterProScan.

(171-266)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/blpH Streptococcus mutans UA159

43.796

100

0.44

  comD/comD3 Streptococcus equinus JB1

41.107

92.674

0.381

  comD/comD2 Streptococcus equinus JB1

37.681

100

0.381