Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   H0242_RS19365 Genome accession   NZ_CP059148
Coordinates   3812022..3813260 (-) Length   412 a.a.
NCBI ID   WP_086407582.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3807022..3818260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS19340 (H0242_19095) spoVS 3807106..3807366 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  H0242_RS19345 (H0242_19100) - 3807516..3808310 (-) 795 WP_001221092.1 TIGR00282 family metallophosphoesterase -
  H0242_RS19350 (H0242_19105) rny 3808472..3810037 (-) 1566 WP_086407581.1 ribonuclease Y -
  H0242_RS19355 (H0242_19110) - 3810520..3810942 (-) 423 Protein_3754 recombinase RecA -
  H0242_RS19360 (H0242_19115) recA 3811270..3811878 (-) 609 Protein_3755 recombinase RecA -
  H0242_RS19365 (H0242_19120) cinA 3812022..3813260 (-) 1239 WP_086407582.1 competence/damage-inducible protein A Machinery gene
  H0242_RS19370 (H0242_19125) pgsA 3813281..3813859 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H0242_RS19375 (H0242_19130) - 3813924..3814835 (-) 912 WP_086407583.1 helix-turn-helix domain-containing protein -
  H0242_RS19380 (H0242_19135) - 3814857..3815642 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  H0242_RS19385 (H0242_19140) - 3815781..3816029 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  H0242_RS19390 (H0242_19145) ymfI 3816105..3816818 (-) 714 WP_000759627.1 elongation factor P 5-aminopentanone reductase -
  H0242_RS19395 (H0242_19150) yfmH 3816919..3818205 (-) 1287 WP_000411973.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45379.72 Da        Isoelectric Point: 5.3450

>NTDB_id=467373 H0242_RS19365 WP_086407582.1 3812022..3813260(-) (cinA) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLALIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGINKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLGVPEEV
LHTDGAVSKECARYIAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSTKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=467373 H0242_RS19365 WP_086407582.1 3812022..3813260(-) (cinA) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTTAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGATAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTGGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTAGGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATATTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTGGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCGACAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.049

99.515

0.578
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.379

91.505

0.379