Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HZS52_RS17700 Genome accession   NZ_CP059082
Coordinates   3818382..3819614 (+) Length   410 a.a.
NCBI ID   WP_022523592.1    Uniprot ID   A0AAP9NKD7
Organism   Vreelandella titanicae strain SOB56     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3813382..3824614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS52_RS24485 - 3813977..3814078 (+) 102 WP_223828144.1 IS66 family transposase zinc-finger binding domain-containing protein -
  HZS52_RS17680 (HZS52_17680) - 3814431..3815252 (-) 822 WP_190373265.1 inositol monophosphatase family protein -
  HZS52_RS17685 (HZS52_17685) - 3815347..3815781 (-) 435 WP_027959308.1 anti-virulence regulator CigR family protein -
  HZS52_RS17690 (HZS52_17690) - 3815894..3816388 (-) 495 WP_190373266.1 pilin -
  HZS52_RS17695 (HZS52_17695) pilB 3816630..3818378 (+) 1749 WP_190373267.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZS52_RS17700 (HZS52_17700) pilC 3818382..3819614 (+) 1233 WP_022523592.1 type II secretion system F family protein Machinery gene
  HZS52_RS17705 (HZS52_17705) pilD 3819807..3820652 (+) 846 WP_022523593.1 A24 family peptidase Machinery gene
  HZS52_RS17710 (HZS52_17710) coaE 3820721..3821323 (+) 603 WP_190373268.1 dephospho-CoA kinase -
  HZS52_RS17715 (HZS52_17715) yacG 3821359..3821592 (+) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  HZS52_RS17720 (HZS52_17720) - 3821632..3822519 (+) 888 WP_022523596.1 hypothetical protein -
  HZS52_RS17725 (HZS52_17725) - 3822543..3822902 (-) 360 WP_035537408.1 hypothetical protein -
  HZS52_RS17730 (HZS52_17730) - 3823277..3824107 (+) 831 WP_190373269.1 helix-turn-helix transcriptional regulator -
  HZS52_RS17735 (HZS52_17735) - 3824196..3824570 (-) 375 WP_022523599.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44710.63 Da        Isoelectric Point: 10.6296

>NTDB_id=467159 HZS52_RS17700 WP_022523592.1 3818382..3819614(+) (pilC) [Vreelandella titanicae strain SOB56]
MAKTARRRQTPAIKLARWKWIGKGPQDRALSGEMIGRSKAEVAAKLTKQNIVIRRISKKGNLGGNGRVNPNDVMVFARQM
ATMVRAGIPLLQALQVVAESLKKPAMVALMQQMISDVSSGSSFSDALNRHPKHFDRLFVNLVSAGEQSGALDQMLDRLAT
YKEKVESLKARVKKALWYPTTVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQLTVNLSGLAQRYWLAALGAVIAA
VLLLRISIQRSPNVAYRMHALLLRLPVIGDIMHKSAIARFSRTLATTFASGVPLVEGLDTAAGATGNKVYERAVAQTRQD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDVMLNRVADYYEEEVDNKVDALTSLMEPVIIVVLGVLVGGVVVSMY
LPIFDLGAAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=467159 HZS52_RS17700 WP_022523592.1 3818382..3819614(+) (pilC) [Vreelandella titanicae strain SOB56]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAAGCTAGCGCGCTGGAAATGGATCGGTAAAGGCCCCCAGGA
TAGAGCGCTAAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTAAACTCACCAAGCAAAATATCGTTATCC
GCCGGATTAGTAAAAAAGGCAACCTAGGTGGCAACGGCCGAGTTAACCCCAACGACGTTATGGTCTTTGCGCGCCAGATG
GCCACAATGGTTCGCGCCGGTATCCCCTTGCTACAGGCGCTTCAAGTGGTGGCAGAGAGCCTCAAAAAACCTGCTATGGT
TGCCCTAATGCAACAGATGATAAGCGATGTATCATCGGGCTCCAGCTTCTCTGATGCATTGAACCGCCACCCCAAACACT
TTGATCGCCTGTTTGTTAACCTAGTCAGCGCCGGCGAGCAGTCAGGTGCGCTGGATCAAATGCTTGATCGTCTTGCGACC
TATAAGGAGAAGGTTGAGTCGCTGAAAGCGCGAGTAAAAAAAGCGCTTTGGTACCCCACCACCGTTATGACGATTGGCAT
TGCTGTGACCATGTTGCTGTTGATTAAAGTGGTGCCTGAATTTGAAAGCATGTTCCAGAGCTTTGGTGCAGAGCTTCCCG
CACTGACCCAGTTGACCGTGAATTTATCCGGGCTTGCCCAGCGTTATTGGCTAGCGGCGCTCGGCGCGGTGATTGCTGCC
GTCCTACTACTCAGAATAAGCATTCAGCGCTCGCCTAATGTCGCTTACCGCATGCACGCTTTGCTGCTTCGGTTACCGGT
CATTGGCGATATCATGCATAAATCCGCCATCGCCCGCTTTTCGCGTACCTTAGCGACTACCTTTGCCTCCGGTGTACCGC
TCGTAGAAGGCTTAGATACCGCCGCCGGTGCCACCGGCAATAAAGTGTACGAACGCGCGGTGGCACAAACGCGCCAGGAC
GTAGCCACCGGACAACAGCTACACTTCGCCATGCGGATGACCAACCGCTTTCCCCCCTTGGCAATCCAAATGGTCAGTAT
CGGTGAAGAAGCGGGGTCGCTGGATGTCATGCTTAATCGTGTTGCCGATTACTACGAAGAAGAAGTCGACAATAAGGTCG
ATGCTCTTACCTCGCTCATGGAGCCGGTTATTATTGTAGTACTGGGCGTGCTCGTTGGCGGTGTGGTTGTCTCTATGTAC
TTACCCATTTTCGACTTGGGCGCAGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.332

94.146

0.493
  pilC Acinetobacter baumannii D1279779

51.436

93.415

0.48
  pilC Pseudomonas stutzeri DSM 10701

47.87

97.317

0.466
  pilC Legionella pneumophila strain ERS1305867

47.044

99.024

0.466
  pilC Vibrio cholerae strain A1552

43.489

99.268

0.432
  pilG Neisseria meningitidis 44/76-A

43.25

97.561

0.422
  pilG Neisseria gonorrhoeae MS11

43.25

97.561

0.422
  pilC Vibrio campbellii strain DS40M4

42.506

99.268

0.422