Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   I6J86_RS17650 Genome accession   NZ_CP069451
Coordinates   3699974..3701977 (+) Length   667 a.a.
NCBI ID   WP_000087338.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3694974..3706977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J86_RS17630 (I6J86_17630) eutP 3695316..3695795 (-) 480 WP_204159005.1 ethanolamine utilization acetate kinase EutP -
  I6J86_RS17635 (I6J86_17635) eutS 3695808..3696143 (-) 336 WP_000356956.1 ethanolamine utilization microcompartment protein EutS -
  I6J86_RS17640 (I6J86_17640) maeB 3696436..3698715 (-) 2280 WP_000342643.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
  I6J86_RS17645 (I6J86_17645) tal 3699004..3699954 (+) 951 WP_001003709.1 transaldolase -
  I6J86_RS17650 (I6J86_17650) recP/tkt 3699974..3701977 (+) 2004 WP_000087338.1 transketolase Machinery gene
  I6J86_RS17655 (I6J86_17655) ypfG 3702054..3703097 (-) 1044 WP_001270552.1 DUF1176 domain-containing protein -
  I6J86_RS17660 (I6J86_17660) nudK 3703223..3703798 (-) 576 WP_001296284.1 GDP-mannose pyrophosphatase NudK -
  I6J86_RS17665 (I6J86_17665) aegA 3703866..3705845 (-) 1980 WP_001078900.1 formate-dependent uric acid utilization protein AegA -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 73098.79 Da        Isoelectric Point: 6.3826

>NTDB_id=467024 I6J86_RS17650 WP_000087338.1 3699974..3701977(+) (recP/tkt) [Escherichia coli strain FDAARGOS_1256]
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYD
LPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAVAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWNAREKGEKAQQRWNEKFAAYKKAHPQL
AEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSNLTIWKGSVSLKEDPA
GNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEM
EITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVSARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPA
DKLFPFFGFTAENIVAKAHKVLGVKGA

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=467024 I6J86_RS17650 WP_000087338.1 3699974..3701977(+) (recP/tkt) [Escherichia coli strain FDAARGOS_1256]
ATGTCCCGAAAAGACCTTGCCAATGCGATTCGCGCACTCAGTATGGATGCGGTACAAAAAGCCAATTCTGGTCATCCCGG
CGCGCCGATGGGCATGGCTGATATTGCCGAAGTGCTGTGGAACGATTTTCTTAAACATAACCCCACCGACCCAACCTGGT
ATGACCGTGACCGCTTTATTCTTTCCAACGGTCACGCGTCGATGCTGCTCTACAGTTTGCTGCATCTGACCGGTTACGAC
CTGCCACTGGAAGAACTGAAGAACTTCCGTCAGTTGCATTCGAAAACCCCTGGTCACCCGGAAATCGGCTATACGCCAGG
TGTTGAAACCACCACCGGTCCTCTTGGACAAGGTTTGGCGAACGCCGTCGGGCTGGCGGTAGCAGAGCGTACGCTGGCGG
CGCAATTTAATCAGCCGGATCATGAAATTGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGT
ATCTCTCACGAAGTCTGTTCGCTGGCGGGCACGCTGGGGCTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTC
CATCGACGGTGAAACCGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGGTCCACG
AGATCGACGGCCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATT
ATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGA
AGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAGATCCCTAAAGAGATTTATCACGCCTGGA
ATGCCCGCGAAAAAGGCGAAAAAGCGCAGCAGCGCTGGAATGAGAAGTTTGCCGCCTATAAAAAGGCTCATCCGCAACTG
GCAGAAGAGTTTACCCGTCGGATGAGCGGCGGTTTGCCGAAGGACTGGGAGAAAACGACTCAGAAATATATCAATGAGTT
GCAGGCGAATCCGGCGAAAATCGCTACCCGTAAGGCTTCGCAAAATACGCTTAACGCTTACGGGCCGATGCTGCCTGAGT
TGCTCGGCGGTTCGGCGGATCTGGCTCCCAGCAACCTGACCATCTGGAAAGGTTCTGTTTCGCTGAAGGAAGATCCGGCG
GGCAACTACATTCACTACGGGGTGCGTGAATTTGGTATGACCGCTATCGCCAACGGCATCGCGCACCACGGCGGCTTTGT
GCCGTATACCGCGACGTTCCTGATGTTTGTTGAATACGCCCGTAACGCCGCGCGGATGGCGGCACTGATGAAAGCGCGGC
AGATTATGGTTTATACCCACGACTCAATTGGTCTGGGCGAAGATGGTCCGACGCACCAGGCTGTTGAGCAACTGGCTAGT
CTGCGCTTAACGCCAAATTTCAGCACCTGGCGACCGTGCGATCAGGTGGAAGCGGCGGTTGGCTGGAAGCTGGCGGTTGA
GCGCCACAACGGACCGACAGCACTGATCCTCTCAAGGCAGAATCTGGCACAGGTAGAACGAACACCGGATCAGGTTAAAG
AGATTGCTCGTGGCGGTTATGTGCTGAAAGACAGCGGCGGTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATG
GAAATCACCCTGCAAGCGGCAGAGAAATTAGCGGGAGAAGGTCGCAATGTTCGCGTGGTTTCCCTGCCTTCGACCGATAT
TTTCGATGCCCAGGATGAGGAATATCGCGAGTCGGTACTGCCTTCAAATGTTTCTGCCCGCGTGGCAGTAGAAGCGGGTA
TTGCCGATTACTGGTACAAATATGTTGGTCTGAAAGGGGCAATTGTCGGGATGACAGGTTATGGGGAATCTGCTCCGGCG
GATAAGCTGTTCCCGTTCTTTGGCTTTACCGCCGAGAATATTGTGGCAAAAGCGCATAAGGTACTGGGAGTGAAAGGTGC
CTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-523)

Transketolase, C-terminal domain (Transketolase_C)

(539-654)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.8

98.801

0.472