Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H0S59_RS17430 Genome accession   NZ_CP059078
Coordinates   3714405..3715049 (-) Length   214 a.a.
NCBI ID   WP_006581060.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3709405..3720049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS17410 (H0S59_17420) aroK 3710321..3710890 (-) 570 WP_006582544.1 shikimate kinase AroK -
  H0S59_RS17415 (H0S59_17425) pilQ 3710902..3713067 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S59_RS17420 (H0S59_17430) pilP 3713130..3713657 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  H0S59_RS17425 (H0S59_17435) pilO 3713668..3714408 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S59_RS17430 (H0S59_17440) pilN 3714405..3715049 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  H0S59_RS17435 (H0S59_17445) comM 3715049..3716107 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  H0S59_RS17440 (H0S59_17450) ponA 3716270..3718828 (+) 2559 WP_143216949.1 penicillin-binding protein PBP1a -
  H0S59_RS17445 (H0S59_17455) - 3718846..3719670 (-) 825 WP_006582539.1 putative RNA methyltransferase -
  H0S59_RS17450 (H0S59_17460) - 3719673..3720005 (-) 333 WP_002051722.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24226.61 Da        Isoelectric Point: 6.0119

>NTDB_id=467023 H0S59_RS17430 WP_006581060.1 3714405..3715049(-) (pilN) [Acinetobacter nosocomialis strain WM98B]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=467023 H0S59_RS17430 WP_006581060.1 3714405..3715049(-) (pilN) [Acinetobacter nosocomialis strain WM98B]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCAAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678