Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H0S59_RS17425 Genome accession   NZ_CP059078
Coordinates   3713668..3714408 (-) Length   246 a.a.
NCBI ID   WP_006582541.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3708668..3719408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS17405 (H0S59_17415) aroB 3709210..3710292 (-) 1083 WP_006582545.1 3-dehydroquinate synthase -
  H0S59_RS17410 (H0S59_17420) aroK 3710321..3710890 (-) 570 WP_006582544.1 shikimate kinase AroK -
  H0S59_RS17415 (H0S59_17425) pilQ 3710902..3713067 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S59_RS17420 (H0S59_17430) pilP 3713130..3713657 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  H0S59_RS17425 (H0S59_17435) pilO 3713668..3714408 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S59_RS17430 (H0S59_17440) pilN 3714405..3715049 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  H0S59_RS17435 (H0S59_17445) comM 3715049..3716107 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  H0S59_RS17440 (H0S59_17450) ponA 3716270..3718828 (+) 2559 WP_143216949.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27595.33 Da        Isoelectric Point: 4.9673

>NTDB_id=467022 H0S59_RS17425 WP_006582541.1 3713668..3714408(-) (pilO) [Acinetobacter nosocomialis strain WM98B]
MSQDELQELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWTFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAQAKDSKSDIPVLNYSIKAKTYRYIGAPEASAQPAKAAAATAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=467022 H0S59_RS17425 WP_006582541.1 3713668..3714408(-) (pilO) [Acinetobacter nosocomialis strain WM98B]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGACTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCGAAATTACGTAATCTTCAGCAGTATCAAGTGCAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATCCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCAAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCACCAGAGGCATCGGCACAACCAGCTAAGGCTGCAGCGGCGACTGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

88.618

100

0.886
  comO Acinetobacter baylyi ADP1

70.539

97.967

0.691