Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H0S59_RS17415 Genome accession   NZ_CP059078
Coordinates   3710902..3713067 (-) Length   721 a.a.
NCBI ID   WP_004711661.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3705902..3718067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS17400 (H0S59_17410) - 3708319..3709194 (-) 876 WP_002051731.1 hypothetical protein -
  H0S59_RS17405 (H0S59_17415) aroB 3709210..3710292 (-) 1083 WP_006582545.1 3-dehydroquinate synthase -
  H0S59_RS17410 (H0S59_17420) aroK 3710321..3710890 (-) 570 WP_006582544.1 shikimate kinase AroK -
  H0S59_RS17415 (H0S59_17425) pilQ 3710902..3713067 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S59_RS17420 (H0S59_17430) pilP 3713130..3713657 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  H0S59_RS17425 (H0S59_17435) pilO 3713668..3714408 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S59_RS17430 (H0S59_17440) pilN 3714405..3715049 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  H0S59_RS17435 (H0S59_17445) comM 3715049..3716107 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77824.16 Da        Isoelectric Point: 6.5404

>NTDB_id=467020 H0S59_RS17415 WP_004711661.1 3710902..3713067(-) (pilQ) [Acinetobacter nosocomialis strain WM98B]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQPNNKPVPVVTAQPQGISNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=467020 H0S59_RS17415 WP_004711661.1 3710902..3713067(-) (pilQ) [Acinetobacter nosocomialis strain WM98B]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGTTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCGACCAATGAAGCAAGCTCTGTAGATGTAACTTCAGATGATCAACGTTCACGTTTGACTGTAAATTTAAAAGA
TGCTGGAGCGTTTACAACACGTGTGGAAGGTAATACTTTCATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACCTG
TACCAGTAGTTACTGCACAACCACAAGGTATTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGATGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTACGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAATGTAACTTCTCTATATAAAACGCCAAATTATTCTGGAAATAAGCTTTCGCTAGA
TTTTCAAGACATCGAAGTGCGCCGTGTTTTACAGCTCCTTGCTGATTTTACGGGAATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGTTTAAAAGATGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCGGAAGAGGAAGAAGCAAAAGC
TGTAGCGCAAAGTGTAAAACTTGCTCCGTTACAGACAGAGTATATTCAACTTAAATACGCTAAAGCTGGCGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGCTTACAACATACTTCTGGTGGAGGAACTTCAACTTCAACCAATTTA
AATACTGGCGTTGATAGTCTTGGGAATAATGTGGGTAGTTTACTTAGCCCTCGCGGTACCATTACTCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCGATTGATCAAATTCGAAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTTATGGTTGAAGCACGTATTGTGAGAGCGTCTACGTCGTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTT
TCGCAAGGTATTACCAATAATAAAAATTTGTTGGTTGGTGGTAGTGAAACAACTTTATGGAATCTGCGCGAACCTAAAAA
AGATGAAACTACAGGTGGCTATAAATATACGATTGAGCGCCCAGATAATTTAAACGTTGATTTGGGGGTTTCTAATCCTG
CCGGTAGTATTGCCTTTGGTCTTATTAGTATGTCGGACTTCATGTTGGATCTTGAGCTCTCAGCTTTACAAGCCGATGGT
TATGGTGAAGTAATTTCAACGCCTAAAGTGATGACCGCCGATAAGCAAACTGCGAAAGTAGCAACAGGTCAACAAGTTCC
ATATCAAACTACGACAAATTCTGCTGCAGGCTCAACAGCTACAACATCATTTAAAGATGCATTACTAAGCCTAAATGTAA
CTCCAAGTATTACGCCTGACGGTAAGATTCAAATGAAATTGGATATTTCTAAGGACTCTGTAGCAGGTGCGGCCCCAAAT
GGTGAATTAATTCTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAGACCGTTATTTTAGGTGGTGT
ATTCGAGCAAACAACGACGAATTCTCAAACCAAAGTTCCGTTTTTTGGTGATATTCCTGTTGTAGGGCATTTATTTAGAA
AAGATGTAAAGTCTGATGATAAGCAAGAATTATTGATTTTCGTAACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

97.365

100

0.974
  pilQ Acinetobacter baumannii strain A118

97.226

100

0.972
  comQ Acinetobacter baylyi ADP1

75.104

100

0.753
  pilQ Pseudomonas aeruginosa PAK

39.702

100

0.406