Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H0S59_RS17420 Genome accession   NZ_CP059078
Coordinates   3713130..3713657 (-) Length   175 a.a.
NCBI ID   WP_006582542.1    Uniprot ID   A0A1V0YNM7
Organism   Acinetobacter nosocomialis strain WM98B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3708130..3718657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS17400 (H0S59_17410) - 3708319..3709194 (-) 876 WP_002051731.1 hypothetical protein -
  H0S59_RS17405 (H0S59_17415) aroB 3709210..3710292 (-) 1083 WP_006582545.1 3-dehydroquinate synthase -
  H0S59_RS17410 (H0S59_17420) aroK 3710321..3710890 (-) 570 WP_006582544.1 shikimate kinase AroK -
  H0S59_RS17415 (H0S59_17425) pilQ 3710902..3713067 (-) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S59_RS17420 (H0S59_17430) pilP 3713130..3713657 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  H0S59_RS17425 (H0S59_17435) pilO 3713668..3714408 (-) 741 WP_006582541.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S59_RS17430 (H0S59_17440) pilN 3714405..3715049 (-) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  H0S59_RS17435 (H0S59_17445) comM 3715049..3716107 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19399.61 Da        Isoelectric Point: 9.4011

>NTDB_id=467021 H0S59_RS17420 WP_006582542.1 3713130..3713657(-) (pilP) [Acinetobacter nosocomialis strain WM98B]
MKIKQITLYVLACAALVGCDSRIDAVNQQMASIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLENYALEALNMKGSMRNNRGQILALIQTPDHQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=467021 H0S59_RS17420 WP_006582542.1 3713130..3713657(-) (pilP) [Acinetobacter nosocomialis strain WM98B]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCCTGTGCCGCTCTTGTGGGATGTGATTCAAGAATTGACGCAGTCAA
TCAGCAAATGGCAAGTATTCGTAATCAGCCACCGCTCCCTATTGAGCCAGCGCCGATTTTTACCCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCGTTTATGCCAAGCTCACTGGCAGCTGAGCTTAAAATTATGGCCGGGAAGCGA
GTGTATCCAAATTTCTCACGTGCACCGCAACCATTAGAAAACTATGCACTTGAAGCCTTAAATATGAAAGGAAGCATGCG
TAATAATCGTGGTCAAATATTGGCTTTGATTCAGACACCGGATCATCAAATTGAACGGGTACAAGTGGGTAATTATATGG
GCATGAATCAGGGCCGTATTACTCATATTAGTCCAACCCAGATTGATCTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAGAGACCGAGAACTTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0YNM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

97.143

100

0.971
  comL Acinetobacter baylyi ADP1

70.76

97.714

0.691