Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GZH31_RS13500 Genome accession   NZ_CP058972
Coordinates   2989865..2991094 (+) Length   409 a.a.
NCBI ID   WP_180311092.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. JSTW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2984865..2996094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH31_RS13475 (GZH31_13475) ampE 2985107..2985958 (-) 852 WP_180311087.1 beta-lactamase regulator AmpE -
  GZH31_RS13480 (GZH31_13480) ampD 2985982..2986524 (-) 543 WP_180311088.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GZH31_RS13485 (GZH31_13485) nadC 2986714..2987562 (+) 849 WP_180311089.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GZH31_RS13490 (GZH31_13490) - 2988060..2988503 (+) 444 WP_180311090.1 pilin -
  GZH31_RS13495 (GZH31_13495) - 2988550..2989845 (+) 1296 WP_180311091.1 O-antigen ligase family protein -
  GZH31_RS13500 (GZH31_13500) pilC 2989865..2991094 (+) 1230 WP_180311092.1 type II secretion system F family protein Machinery gene
  GZH31_RS13505 (GZH31_13505) pilD 2991274..2992170 (+) 897 WP_180311093.1 A24 family peptidase Machinery gene
  GZH31_RS13510 (GZH31_13510) coaE 2992173..2992781 (+) 609 WP_180311094.1 dephospho-CoA kinase -
  GZH31_RS13515 (GZH31_13515) pilB 2992944..2994620 (+) 1677 WP_118844625.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GZH31_RS13520 (GZH31_13520) yacG 2994688..2994921 (+) 234 WP_036965896.1 DNA gyrase inhibitor YacG -
  GZH31_RS13525 (GZH31_13525) - 2994983..2995513 (-) 531 WP_051501715.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44618.92 Da        Isoelectric Point: 9.7944

>NTDB_id=466260 GZH31_RS13500 WP_180311092.1 2989865..2991094(+) (pilC) [Pseudoalteromonas sp. JSTW]
MSKQIEKNKLDTFQWVGLSARGKKLEGELSGQSIALVKAQLRKQGITPSKVKRKAKPLFGIKHVQKITPKDIALITRQIA
TMLMAGVPLIQSIEMIGSGAKNKSVARLMEEIGDEVKAGVPLSQALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKAEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQEIFNGFGAELPAFTLMVIGISEFMQEYWWIMLIAVIAFG
YAYKEALLKSKKLRDANDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEV
SSGNLMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=466260 GZH31_RS13500 WP_180311092.1 2989865..2991094(+) (pilC) [Pseudoalteromonas sp. JSTW]
ATGTCAAAACAAATAGAAAAAAATAAATTAGATACTTTTCAATGGGTTGGTTTAAGTGCCAGAGGAAAGAAACTTGAAGG
TGAACTTTCTGGTCAGAGTATAGCATTGGTCAAAGCACAGCTCCGTAAACAAGGAATTACTCCTTCTAAAGTTAAGCGCA
AAGCAAAGCCATTATTTGGCATTAAACATGTACAAAAAATCACCCCTAAAGACATTGCCCTGATTACACGCCAAATAGCG
ACCATGCTGATGGCTGGTGTGCCGCTTATTCAATCTATTGAAATGATAGGTTCAGGTGCTAAAAATAAAAGTGTTGCTAG
GCTGATGGAAGAAATTGGTGACGAAGTAAAAGCGGGTGTGCCACTCTCGCAAGCTTTACGCAAACACCCCCGTTATTTTG
ATGATTTATATTGCGACCTTGTTGCATCGGGTGAACAATCGGGTGCCCTTGATAAAATTTTCGACCGTGTCGCTCTTTAT
AAAGAAAAAGCCGAAGCATTAAAATCTAAAATAAAAAAAGCAATGTTTTACCCGATTGCGGTATTAGTTGTGGCCTTAAT
CGTTACCTCAATCTTACTTATTTTTGTGGTGCCTCAATTCCAAGAGATTTTTAACGGCTTTGGTGCTGAGCTTCCCGCCT
TTACTTTAATGGTGATAGGTATATCTGAATTTATGCAAGAATATTGGTGGATAATGCTGATTGCTGTTATTGCATTTGGC
TATGCCTATAAAGAAGCGCTGCTTAAAAGCAAAAAACTCAGAGATGCCAACGACAGAGCTATATTAAAGTTACCTGTTAT
TGGCATGATTTTAAATAAAGCAGCAGTGGCTCGTTATGCACGCACTCTTTCAACAACCTTTGCTGCGGGTGTGCCCTTGG
TTGATGCGCTCGACTCCGCCGCGGGAGCCTCAGGTAATGCAGTGTACCGTTACGCTATTTTAGAGATAAAAGCAGAAGTG
AGCTCAGGTAATTTGATGAACTGGGCAATGCGAAACTCTAAAATATTTCCTGATATGGTGATCCAAATGGTCGCAATTGG
TGAAGAGTCAGGCTCATTAGATGGCATGCTTGCTAAAGTAGCCACTATTTATGAGCAAGAGGTTGATGACGCGGTCGATG
GCCTTTCGAGCTTATTGGAGCCGTTGATCATGGCTGTACTTGGTGTGCTAGTCGGTGGTTTAATCGTTGCTATGTATTTA
CCTATTTTCCAGTTAGGTTCCGTCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.858

100

0.619
  pilC Legionella pneumophila strain ERS1305867

55.037

99.511

0.548
  pilC Acinetobacter baumannii D1279779

55.25

97.8

0.54
  pilC Acinetobacter baylyi ADP1

54

97.8

0.528
  pilC Vibrio cholerae strain A1552

44.913

98.533

0.443
  pilG Neisseria meningitidis 44/76-A

44.162

96.333

0.425
  pilG Neisseria gonorrhoeae MS11

43.909

96.333

0.423
  pilC Vibrio campbellii strain DS40M4

43.142

98.044

0.423