Detailed information NTG0466070

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: HZ310_RS02315
• Genome accession: NZ_CP058951
• Coordinates: 469479..470165 (+)
• Length: 228 a.a.
• NCBI ID: WP_180310006.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain UAMX
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 464479..475165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ310_RS02290 (HZ310_02290)	degS	464634..465809 (+)	1176	WP_024719243.1	sensor histidine kinase	Regulator
HZ310_RS02295 (HZ310_02295)	degU	465874..466563 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
HZ310_RS02300 (HZ310_02300)	-	466781..467623 (+)	843	WP_180310004.1	DegV family protein	-
HZ310_RS02305 (HZ310_02305)	comFA	467743..469122 (+)	1380	WP_306821882.1	DEAD/DEAH box helicase	Machinery gene
HZ310_RS02310 (HZ310_02310)	-	469189..469482 (+)	294	WP_180310005.1	late competence development ComFB family protein	-
HZ310_RS02315 (HZ310_02315)	comFC	469479..470165 (+)	687	WP_180310006.1	ComF family protein	Machinery gene
HZ310_RS02320 (HZ310_02320)	-	470222..470641 (+)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
HZ310_RS02325 (HZ310_02325)	flgM	470721..470984 (+)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
HZ310_RS02330 (HZ310_02330)	-	471003..471485 (+)	483	WP_169055792.1	flagellar protein FlgN	-
HZ310_RS02335 (HZ310_02335)	flgK	471501..473021 (+)	1521	WP_180310007.1	flagellar hook-associated protein FlgK	-
HZ310_RS02340 (HZ310_02340)	flgL	473031..473942 (+)	912	WP_180310008.1	flagellar hook-associated protein FlgL	-
HZ310_RS02345 (HZ310_02345)	-	473991..474569 (+)	579	WP_180310009.1	DUF6470 family protein	-
HZ310_RS02350 (HZ310_02350)	fliW	474597..475031 (+)	435	WP_180310010.1	flagellar assembly protein FliW	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26049.33 Da
• Isoelectric Point: 9.8294

>NTDB_id=466070 HZ310_RS02315 WP_180310006.1 469479..470165(+) (comFC) [Bacillus pumilus strain UAMX]
MICQICEGHFVASFTWKSLLLLNEDRLCIACKHRLEKIQRPICPACGRAQSNDQLCQDCSRWKERLDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAIFKRSFSIKEPVLIPIPLSKERLNERGFNQSVILASLIGQPIQQPLVKIH
QSKQSKKKKNERLDQKGMFQINQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=466070 HZ310_RS02315 WP_180310006.1 469479..470165(+) (comFC) [Bacillus pumilus strain UAMX]
TTGATCTGCCAAATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGAAGATCGTCT
ATGTATAGCATGTAAGCATCGCCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGTCTTGATTCTACTACAGTACTTGTAAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCATTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCGATATTTAAGCGTTCCTTTTCAATTAAAGAACCTGTACTGATCCCGATTCCTTTAAGTAAAGAAAGACTAA
ATGAAAGAGGGTTTAATCAGTCCGTTATACTTGCTTCCTTGATTGGTCAGCCGATCCAGCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAATCAGACAGATGCCAT
CGTTCAAAGGGATGTTATCTTAATTGACGATATTTATACAACAGGGGCTACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCGAAAAGTGTTTCCTCATTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (136-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	39.13	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.261	100	0.386
comFC/cflB	Streptococcus pneumoniae TIGR4	37.391	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373