Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HZ310_RS02295 Genome accession   NZ_CP058951
Coordinates   465874..466563 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain UAMX     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 460874..471563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS02275 (HZ310_02275) - 461601..462668 (+) 1068 WP_058013554.1 glycosyltransferase family 4 protein -
  HZ310_RS02280 (HZ310_02280) - 462704..463759 (-) 1056 WP_061409762.1 LCP family protein -
  HZ310_RS02285 (HZ310_02285) - 463744..464412 (-) 669 WP_058013556.1 YigZ family protein -
  HZ310_RS02290 (HZ310_02290) degS 464634..465809 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  HZ310_RS02295 (HZ310_02295) degU 465874..466563 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  HZ310_RS02300 (HZ310_02300) - 466781..467623 (+) 843 WP_180310004.1 DegV family protein -
  HZ310_RS02305 (HZ310_02305) comFA 467743..469122 (+) 1380 WP_306821882.1 DEAD/DEAH box helicase Machinery gene
  HZ310_RS02310 (HZ310_02310) - 469189..469482 (+) 294 WP_180310005.1 late competence development ComFB family protein -
  HZ310_RS02315 (HZ310_02315) comFC 469479..470165 (+) 687 WP_180310006.1 ComF family protein Machinery gene
  HZ310_RS02320 (HZ310_02320) - 470222..470641 (+) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  HZ310_RS02325 (HZ310_02325) flgM 470721..470984 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  HZ310_RS02330 (HZ310_02330) - 471003..471485 (+) 483 WP_169055792.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=466068 HZ310_RS02295 WP_008348273.1 465874..466563(+) (degU) [Bacillus pumilus strain UAMX]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=466068 HZ310_RS02295 WP_008348273.1 465874..466563(+) (degU) [Bacillus pumilus strain UAMX]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTTAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGTCGCCTAGCGACTAGCGGTGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGG
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996