Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HZ310_RS02305 Genome accession   NZ_CP058951
Coordinates   467743..469122 (+) Length   459 a.a.
NCBI ID   WP_306821882.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462743..474122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS02285 (HZ310_02285) - 463744..464412 (-) 669 WP_058013556.1 YigZ family protein -
  HZ310_RS02290 (HZ310_02290) degS 464634..465809 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  HZ310_RS02295 (HZ310_02295) degU 465874..466563 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  HZ310_RS02300 (HZ310_02300) - 466781..467623 (+) 843 WP_180310004.1 DegV family protein -
  HZ310_RS02305 (HZ310_02305) comFA 467743..469122 (+) 1380 WP_306821882.1 DEAD/DEAH box helicase Machinery gene
  HZ310_RS02310 (HZ310_02310) - 469189..469482 (+) 294 WP_180310005.1 late competence development ComFB family protein -
  HZ310_RS02315 (HZ310_02315) comFC 469479..470165 (+) 687 WP_180310006.1 ComF family protein Machinery gene
  HZ310_RS02320 (HZ310_02320) - 470222..470641 (+) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  HZ310_RS02325 (HZ310_02325) flgM 470721..470984 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  HZ310_RS02330 (HZ310_02330) - 471003..471485 (+) 483 WP_169055792.1 flagellar protein FlgN -
  HZ310_RS02335 (HZ310_02335) flgK 471501..473021 (+) 1521 WP_180310007.1 flagellar hook-associated protein FlgK -
  HZ310_RS02340 (HZ310_02340) flgL 473031..473942 (+) 912 WP_180310008.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52509.42 Da        Isoelectric Point: 10.1863

>NTDB_id=466069 HZ310_RS02305 WP_306821882.1 467743..469122(+) (comFA) [Bacillus pumilus strain UAMX]
MNMDKAIELGQHLQSRHLLTAETRCSQSDLNWLEEKGLVMRTPAIERKANGLICCRCGVSKNWYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQMEEPCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWVGNWKKKLKKNQLPSKVMNWMQN
HITKKRRTLFFVPSISTMKKVTKVLRKHHLNVEGVSAEDPDRKQKVQQFRDNKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=466069 HZ310_RS02305 WP_306821882.1 467743..469122(+) (comFA) [Bacillus pumilus strain UAMX]
TTGAACATGGACAAAGCAATTGAACTAGGGCAGCACCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCGCA
GTCTGATTTGAATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATTGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAACCATG
TCACACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCACTAGTCATTGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATTGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAAAGATGTATTTCGCGGACAACTAGAAGCGATAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGGTTGGAAATTGGAAGAAGAAATTAAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGACTTTATTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATAATAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACGATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCTGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAATATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.675

97.821

0.525