Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | HZT35_RS19280 | Genome accession | NZ_CP058682 |
| Coordinates | 3686363..3686992 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain MBT-5 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3661168..3699495 | 3686363..3686992 | within | 0 |
Gene organization within MGE regions
Location: 3661168..3699495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT35_RS19080 (HZT35_07975) | - | 3661389..3661661 (-) | 273 | WP_001342259.1 | hypothetical protein | - |
| HZT35_RS30950 | - | 3661630..3661761 (-) | 132 | WP_001342258.1 | hypothetical protein | - |
| HZT35_RS19085 (HZT35_07980) | - | 3661797..3662054 (+) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HZT35_RS19090 (HZT35_07985) | - | 3662060..3662359 (+) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HZT35_RS19095 (HZT35_07990) | - | 3662564..3662908 (-) | 345 | WP_000206830.1 | hypothetical protein | - |
| HZT35_RS19100 (HZT35_07995) | - | 3662905..3663270 (-) | 366 | WP_001229296.1 | HNH endonuclease signature motif containing protein | - |
| HZT35_RS19105 (HZT35_08000) | - | 3663272..3663490 (-) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| HZT35_RS19110 (HZT35_08005) | - | 3663716..3664213 (-) | 498 | Protein_3804 | ead/Ea22-like family protein | - |
| HZT35_RS19115 (HZT35_08010) | - | 3664210..3664386 (-) | 177 | WP_000753069.1 | hypothetical protein | - |
| HZT35_RS19120 (HZT35_08015) | - | 3664379..3664561 (-) | 183 | WP_001224662.1 | hypothetical protein | - |
| HZT35_RS19125 (HZT35_08020) | - | 3664595..3664807 (-) | 213 | WP_000935422.1 | hypothetical protein | - |
| HZT35_RS19130 (HZT35_08025) | - | 3664858..3665214 (-) | 357 | WP_000403783.1 | hypothetical protein | - |
| HZT35_RS19135 (HZT35_08030) | - | 3665192..3665653 (-) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| HZT35_RS19140 (HZT35_08035) | - | 3665650..3665946 (-) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| HZT35_RS19145 (HZT35_08040) | - | 3665943..3666335 (-) | 393 | WP_001040234.1 | DUF977 family protein | - |
| HZT35_RS19150 (HZT35_08045) | - | 3666351..3667076 (-) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| HZT35_RS19155 (HZT35_08050) | - | 3667110..3667571 (-) | 462 | WP_000139444.1 | replication protein P | - |
| HZT35_RS19160 (HZT35_08055) | - | 3667564..3668574 (-) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| HZT35_RS19165 (HZT35_08060) | - | 3668661..3669098 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| HZT35_RS19170 (HZT35_08065) | - | 3669095..3669355 (-) | 261 | WP_001172789.1 | YdaS family helix-turn-helix protein | - |
| HZT35_RS19175 (HZT35_08070) | - | 3669482..3669874 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| HZT35_RS19180 (HZT35_08075) | - | 3669921..3670280 (-) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| HZT35_RS19185 (HZT35_08080) | - | 3670283..3670585 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| HZT35_RS19190 (HZT35_08085) | - | 3670921..3671220 (+) | 300 | WP_012817750.1 | hypothetical protein | - |
| HZT35_RS19195 (HZT35_08090) | ydfC | 3671292..3671510 (+) | 219 | WP_001171921.1 | protein YdfC | - |
| HZT35_RS19200 (HZT35_08095) | dicB | 3672079..3672267 (+) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| HZT35_RS19205 (HZT35_08100) | - | 3672264..3672452 (+) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| HZT35_RS19210 (HZT35_08105) | - | 3672547..3674997 (+) | 2451 | WP_000048499.1 | exonuclease | - |
| HZT35_RS19215 (HZT35_08110) | - | 3675065..3675307 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| HZT35_RS19220 (HZT35_08115) | - | 3675285..3676304 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| HZT35_RS19225 (HZT35_08120) | yccA | 3676712..3677371 (+) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| HZT35_RS19230 (HZT35_08125) | tusE | 3677462..3677791 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| HZT35_RS19235 (HZT35_08130) | yccX | 3677788..3678066 (-) | 279 | WP_000048244.1 | acylphosphatase | - |
| HZT35_RS19240 (HZT35_08135) | rlmI | 3678161..3679351 (+) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| HZT35_RS19245 (HZT35_08140) | hspQ | 3679409..3679726 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| HZT35_RS19250 (HZT35_08145) | yccU | 3679771..3680184 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| HZT35_RS19255 (HZT35_08150) | yccT | 3680357..3681019 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| HZT35_RS19260 (HZT35_08155) | mgsA | 3681115..3681573 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| HZT35_RS19265 (HZT35_08160) | helD | 3681605..3683659 (-) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| HZT35_RS19270 (HZT35_08165) | yccF | 3683782..3684228 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| HZT35_RS19275 (HZT35_08170) | yccS | 3684238..3686400 (+) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| HZT35_RS19280 (HZT35_08175) | sxy/tfoX | 3686363..3686992 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| HZT35_RS19285 (HZT35_08180) | sulA | 3687211..3687720 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| HZT35_RS19290 (HZT35_08185) | ompA | 3688077..3689117 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| HZT35_RS19295 (HZT35_08190) | matP | 3689192..3689644 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| HZT35_RS19300 (HZT35_08195) | ycbZ | 3689830..3691590 (+) | 1761 | WP_000156528.1 | Lon protease family protein | - |
| HZT35_RS19305 (HZT35_08200) | fabA | 3691659..3692177 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| HZT35_RS19310 (HZT35_08205) | rmf | 3692247..3692414 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| HZT35_RS19315 (HZT35_08210) | pqiC | 3692670..3693233 (-) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| HZT35_RS19320 (HZT35_08215) | pqiB | 3693230..3694870 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| HZT35_RS19325 (HZT35_08220) | pqiA | 3694875..3696128 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| HZT35_RS19330 (HZT35_08225) | uup | 3696258..3698165 (-) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=464938 HZT35_RS19280 WP_000839153.1 3686363..3686992(-) (sxy/tfoX) [Escherichia coli strain MBT-5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=464938 HZT35_RS19280 WP_000839153.1 3686363..3686992(-) (sxy/tfoX) [Escherichia coli strain MBT-5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |