Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HA399_RS03730 Genome accession   NZ_CP058244
Coordinates   877634..878872 (-) Length   412 a.a.
NCBI ID   WP_404326095.1    Uniprot ID   -
Organism   Cobetia sp. UIB-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872634..883872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA399_RS03705 (HA399_03705) argJ 873383..874606 (+) 1224 WP_404326092.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  HA399_RS03710 (HA399_03710) - 874713..875666 (+) 954 WP_107335407.1 Nudix family hydrolase -
  HA399_RS03715 (HA399_03715) yacG 875797..876042 (-) 246 WP_043332481.1 DNA gyrase inhibitor YacG -
  HA399_RS03720 (HA399_03720) coaE 876035..876685 (-) 651 WP_404326093.1 dephospho-CoA kinase -
  HA399_RS03725 (HA399_03725) pilD 876682..877542 (-) 861 WP_303568750.1 A24 family peptidase Machinery gene
  HA399_RS03730 (HA399_03730) pilC 877634..878872 (-) 1239 WP_404326095.1 type II secretion system F family protein Machinery gene
  HA399_RS03735 (HA399_03735) pilB 879047..880783 (-) 1737 WP_404326097.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HA399_RS03740 (HA399_03740) - 881358..881804 (+) 447 WP_404326099.1 pilin -
  HA399_RS03745 (HA399_03745) - 882025..883200 (+) 1176 WP_404326101.1 O-antigen ligase family protein -
  HA399_RS03750 (HA399_03750) - 883238..883540 (-) 303 WP_043332474.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44799.22 Da        Isoelectric Point: 9.7590

>NTDB_id=463003 HA399_RS03730 WP_404326095.1 877634..878872(-) (pilC) [Cobetia sp. UIB-001]
MATPRTAKKDKKKAGIETWQWSGKNSRGENVKGELMSANVDQVKSTLVSQGIVLKRLRKKSSLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDMMNQVGAGASFSEALRKHPQHFDNLFANLVEAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFETLFQGFGAELPAFTQLTINLSEYAQNYWYVALGIVV
LTGMLIAQGMKRSEKFAYGCHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFELGNAI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=463003 HA399_RS03730 WP_404326095.1 877634..878872(-) (pilC) [Cobetia sp. UIB-001]
ATGGCAACTCCCAGAACTGCCAAGAAAGACAAGAAAAAAGCGGGCATTGAAACTTGGCAATGGTCGGGCAAGAACTCGCG
CGGTGAAAACGTCAAGGGCGAGCTGATGTCGGCCAACGTCGATCAGGTCAAGAGCACGCTGGTCAGCCAGGGGATCGTGC
TCAAGCGCCTGCGCAAGAAGTCCTCCCTGTTTGGCGGCAGCAAGAAGGTCAGTGGCAAGGATGTCACCATGTTCGCCCGT
CAGATGGCGACCATGATCCGTGCTGGCGTACCGGTACTTCAGGCATTTGGCATCGTGGCTGAAAGCATGAAGAGTCCAGG
CATGCGTCATCTGGTCGAAGACATGATGAATCAGGTGGGAGCAGGCGCCAGCTTTTCGGAAGCCTTGCGCAAACACCCCC
AGCATTTTGATAACCTGTTTGCCAATCTGGTTGAAGCTGGCGAACAAGCTGGCGCCTTGGACAAGATGCTCGACCGTGTC
GCAACTTATAAAGAAAAGATTGATTCACTCAAGGCGCGCGTCAAGAAAGCCCTTTATTACCCTATCGCCGTGATCGGCGT
CGGGATCGGGGTAACAGCTATTCTGTTGATCAAGGTAGTCCCACAATTTGAAACTCTTTTTCAAGGCTTTGGCGCAGAAC
TCCCAGCATTTACTCAATTGACTATTAATCTGTCTGAGTACGCTCAAAACTACTGGTATGTAGCCCTTGGCATAGTAGTG
CTTACTGGAATGCTTATTGCTCAAGGCATGAAACGATCTGAAAAATTTGCTTATGGCTGTCACCGCTTCATGCTCAAGGT
ACCCGTGCTCGGCGATATTCTGGATAAATCGTCTGTCGCTCGTTACTCACGCACATTGGCCACCACCTTCCAGGCGGGTG
TTCCGTTAGTGGAATCGCTTGATACTGCCGCCGGCGCCTCAGGCAACAAGGTCTACGAGCGTGCCATTGCCCAGATCAAG
GAAGATGTCTCTACAGGCCAGCAGCTGAACTTCGCCATGCGCAATACGCAATTGTTCCCGACACTGGCGGTGCAAATGGT
GGCGATTGGCGAGGAATCCGGCTCACTGGATGCCATGCTCAACAAGGTGGCGGATTTCTACGAAGAAGATGTCGACAACA
AGGTAGATGCGCTGACCTCATTGCTGGAGCCCTTGATCATCGTGGTGCTAGGCACCCTGGTGGGCGGGCTTGTGGTCTCG
ATGTATCTTCCCATCTTCGAGCTGGGCAACGCGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.468

95.874

0.551
  pilC Acinetobacter baylyi ADP1

52.696

99.029

0.522
  pilC Acinetobacter baumannii D1279779

52.099

98.301

0.512
  pilC Legionella pneumophila strain ERS1305867

51.106

98.786

0.505
  pilC Vibrio campbellii strain DS40M4

44.724

96.602

0.432
  pilC Vibrio cholerae strain A1552

44.836

96.359

0.432
  pilG Neisseria gonorrhoeae MS11

42.579

99.757

0.425
  pilG Neisseria meningitidis 44/76-A

41.99

100

0.42