Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JHW37_RS16540 Genome accession   NZ_CP068238
Coordinates   3534555..3535196 (-) Length   213 a.a.
NCBI ID   WP_003153591.1    Uniprot ID   A0A2R3IWI0
Organism   Pseudomonas aeruginosa strain A39-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529555..3540196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS16525 (JHW37_16525) hupB 3530234..3530506 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  JHW37_RS16530 (JHW37_16530) lon 3530642..3533038 (-) 2397 WP_034080097.1 endopeptidase La -
  JHW37_RS16535 (JHW37_16535) clpX 3533170..3534450 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  JHW37_RS16540 (JHW37_16540) clpP 3534555..3535196 (-) 642 WP_003153591.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JHW37_RS16545 (JHW37_16545) tig 3535289..3536599 (-) 1311 WP_003153592.1 trigger factor -
  JHW37_RS16550 (JHW37_16550) parR 3536827..3537534 (+) 708 WP_012076173.1 response regulator transcription factor ParR -
  JHW37_RS16555 (JHW37_16555) parS 3537535..3538821 (+) 1287 WP_034080099.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23503.08 Da        Isoelectric Point: 6.3772

>NTDB_id=459236 JHW37_RS16540 WP_003153591.1 3534555..3535196(-) (clpP) [Pseudomonas aeruginosa strain A39-1]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQVLAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDQAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=459236 JHW37_RS16540 WP_003153591.1 3534555..3535196(-) (clpP) [Pseudomonas aeruginosa strain A39-1]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGTGAGCGCGCCTACGACATCTATTCCCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAAGCCGAGAACCCCGAGAAGGATATCCACCTGTACATC
AACTCGCCGGGTGGCTCGGTGACCGCCGGGATGTCGATCTACGACACCATGCAGTTCATCAAGCCGAACGTGTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCTTGCTGCTGGCCGGTGGCGCCGCGGGCAAGCGTTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAACGTCTGAACCAGGTTCTGGCGCACCATACCGGCCAACCGCTGGACGTCATCGCCCGCGACACCGATCG
TGATCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCAGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.229

90.141

0.615
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.263

89.202

0.582
  clpP Lactococcus lactis subsp. cremoris KW2

53.646

90.141

0.484
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.083

90.141

0.469
  clpP Streptococcus mutans UA159

49.744

91.549

0.455
  clpP Streptococcus pyogenes MGAS315

50

91.08

0.455
  clpP Streptococcus pyogenes JRS4

50

91.08

0.455
  clpP Streptococcus pneumoniae R6

50.259

90.61

0.455
  clpP Streptococcus pneumoniae TIGR4

50.259

90.61

0.455
  clpP Streptococcus pneumoniae Rx1

50.259

90.61

0.455
  clpP Streptococcus thermophilus LMD-9

50.259

90.61

0.455
  clpP Streptococcus thermophilus LMG 18311

50.259

90.61

0.455
  clpP Streptococcus pneumoniae D39

50.259

90.61

0.455