Detailed information NTG0459235

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JHW37_RS16535
• Genome accession: NZ_CP068238
• Coordinates: 3533170..3534450 (-)
• Length: 426 a.a.
• NCBI ID: WP_003087924.1
• Uniprot ID: Q02KU5
• Organism: Pseudomonas aeruginosa strain A39-1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3528170..3539450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW37_RS16525 (JHW37_16525)	hupB	3530234..3530506 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
JHW37_RS16530 (JHW37_16530)	lon	3530642..3533038 (-)	2397	WP_034080097.1	endopeptidase La	-
JHW37_RS16535 (JHW37_16535)	clpX	3533170..3534450 (-)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JHW37_RS16540 (JHW37_16540)	clpP	3534555..3535196 (-)	642	WP_003153591.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JHW37_RS16545 (JHW37_16545)	tig	3535289..3536599 (-)	1311	WP_003153592.1	trigger factor	-
JHW37_RS16550 (JHW37_16550)	parR	3536827..3537534 (+)	708	WP_012076173.1	response regulator transcription factor ParR	-
JHW37_RS16555 (JHW37_16555)	parS	3537535..3538821 (+)	1287	WP_034080099.1	sensor histidine kinase ParS	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46991.78 Da
• Isoelectric Point: 4.8347

>NTDB_id=459235 JHW37_RS16535 WP_003087924.1 3533170..3534450(-) (clpX) [Pseudomonas aeruginosa strain A39-1]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSGHKLPAPKEIRTILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEA
ALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDE
SVIDGSSQPLMIYENSEKPAKAAPEA

Nucleotide

• Length: 1281 bp

>NTDB_id=459235 JHW37_RS16535 WP_003087924.1 3533170..3534450(-) (clpX) [Pseudomonas aeruginosa strain A39-1]
ATGACTGATACCCGCAACGGCGAGGACAACGGCAAGCTGCTGTATTGCTCCTTCTGCGGCAAGAGCCAGCACGAAGTGCG
CAAGTTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGTGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCGCAGGCGGAAAGTAGTGGGCACAAACTTCCGGCGCCGAAAGAGATCCGCACCATCCTCGATCAGTACGTGATC
GGGCAGGAGCGGGCGAAGAAGGTTCTGGCGGTAGCGGTGTACAACCACTACAAGCGCCTCAACCAGCGTGACAAGAAGGA
CGATATCGAGCTCGGCAAGAGCAACATTCTGATGATCGGCCCAACCGGCTCGGGCAAGACCCTGCTGGCCGAGACCCTCG
CGCGCCTGCTGAACGTGCCGTTCACCATCGCCGACGCGACCACGCTGACGGAAGCCGGCTATGTGGGCGAGGATGTCGAG
AACATCATCCAGAAACTCCTGCAGAAATGCGACTACGATGTGGAAAAGGCCCAGATGGGTATCGTCTACATCGACGAGAT
CGACAAGATTTCCCGCAAGTCGGATAACCCTTCCATCACTCGCGACGTCTCCGGCGAGGGTGTGCAGCAGGCCTTGCTGA
AGCTCATCGAGGGCACTGTCGCCTCGGTGCCGCCGCAAGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAAGTCGAT
ACGCGCAACATCCTGTTCATCTGCGGCGGCGCCTTCGCCGGCCTGGAGCGGGTCATCCAGAACCGTTCCGCGCGCGGCGG
CATCGGCTTCAATGCCGAGGTGCGCAGCCAGGAAATGGGCAAGAAGGTCGGCGAGGCGTTCAAGGAGGTCGAGCCGGAGG
ATCTGGTCAAGTTCGGCCTGATCCCGGAGTTTGTCGGCCGTTTGCCGGTAATCGCCACGCTCGACGAACTCGACGAGGCT
GCCCTGATGCAGATCCTCACCGAGCCGAAGAACGCGCTCACCAAGCAATACGCCAAGCTGTTCGAGATGGAAGGCGTCGA
TCTCGAGTTCCGCCCGGACGCCCTCAAGGCCGTGGCCCGCAAGGCGCTCGAGCGCAAGACCGGCGCACGCGGCTTGCGTT
CCATTCTCGAAGGTATTCTTCTGGATACCATGTACGAGATTCCCTCCCAGCAGGATGTCAGCAAGGTGGTCATCGATGAG
AGTGTCATCGATGGTTCGTCGCAACCCCTGATGATCTACGAGAACAGCGAAAAGCCAGCCAAGGCTGCGCCTGAGGCATG
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

3D structure

• AlphaFold DB: Q02KU5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.934	95.54	0.582
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.198	94.836	0.523