Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JFJ84_RS01860 Genome accession   NZ_CP066739
Coordinates   366712..367293 (-) Length   193 a.a.
NCBI ID   WP_012341086.1    Uniprot ID   B0UW20
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 361712..372293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS01850 (JFJ84_01845) ilvD 363219..365054 (+) 1836 WP_012341084.1 dihydroxy-acid dehydratase -
  JFJ84_RS01855 (JFJ84_01850) clpX 365452..366696 (-) 1245 WP_012341085.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  JFJ84_RS01860 (JFJ84_01855) clpP 366712..367293 (-) 582 WP_012341086.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JFJ84_RS01865 (JFJ84_01860) tig 367379..368677 (-) 1299 WP_011609585.1 trigger factor -
  JFJ84_RS01870 (JFJ84_01865) pilB 369060..370451 (+) 1392 WP_136122165.1 GspE/PulE family protein Machinery gene
  JFJ84_RS01875 (JFJ84_01870) - 370485..371744 (-) 1260 WP_012341088.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21396.66 Da        Isoelectric Point: 6.1020

>NTDB_id=455734 JFJ84_RS01860 WP_012341086.1 366712..367293(-) (clpP) [Histophilus somni strain ASc-MMNZ-VFA-069]
MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDT
MQFIKPNVRTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQ
SIEQIEQDTDRDNFMSAEQAKLYGLVDDVLIKR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=455734 JFJ84_RS01860 WP_012341086.1 366712..367293(-) (clpP) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGAGCGTCATTCCTATGGTCGTAGAACAAACATCAAGAGGCGAACGATCTTATGATATTTATTCACGTCTATTAAAAGA
GCGGGTGATTTTTCTGACTGGAGAAGTTGAAGATCGTATGGCAAACTTGATTGTTGCTCAACTTCTCTTTTTGGAAGCGG
AAGATCCAGCAAAAGACATTAATATTTATATAAACTCTCCCGGCGGTTCAGTCACTGCCGGAATGGCAATTTATGATACT
ATGCAATTTATTAAGCCTAATGTGAGAACTCTTTGTATTGGACAAGCATGTTCAATGGGAGCATTTTTATTGGCGGGTGG
CACAGCAGGTAAAAGGGCGGCATTGCCTCATGCAAGAGTGATGATTCATCAGCCTTTAGGTGGCTTTAGAGGACAAGCCT
CTGATATTCAAATTCATGCACAAGAAATTTTAAAAATTAAGCAGACGTTAAATGAACGTTTAGCATTTCATACAGGACAA
TCTATTGAACAAATTGAACAAGATACTGATCGTGATAATTTTATGTCTGCAGAACAGGCAAAATTGTACGGTTTAGTTGA
TGACGTGTTAATTAAACGGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UW20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.316

98.446

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648
  clpP Streptococcus pneumoniae D39

54.737

98.446

0.539
  clpP Streptococcus pneumoniae R6

54.737

98.446

0.539
  clpP Streptococcus pneumoniae TIGR4

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMD-9

54.737

98.446

0.539
  clpP Streptococcus pyogenes JRS4

54.737

98.446

0.539
  clpP Streptococcus pyogenes MGAS315

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMG 18311

54.737

98.446

0.539
  clpP Streptococcus pneumoniae Rx1

54.737

98.446

0.539
  clpP Streptococcus mutans UA159

54.45

98.964

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

98.446

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

98.446

0.513