Detailed information NTG0455733

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JFJ84_RS01855
• Genome accession: NZ_CP066739
• Coordinates: 365452..366696 (-)
• Length: 414 a.a.
• NCBI ID: WP_012341085.1
• Uniprot ID: B0UW19
• Organism: Histophilus somni strain ASc-MMNZ-VFA-069
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 360452..371696

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFJ84_RS01845 (JFJ84_01840)	-	361496..363046 (+)	1551	WP_012341083.1	exopolyphosphatase	-
JFJ84_RS01850 (JFJ84_01845)	ilvD	363219..365054 (+)	1836	WP_012341084.1	dihydroxy-acid dehydratase	-
JFJ84_RS01855 (JFJ84_01850)	clpX	365452..366696 (-)	1245	WP_012341085.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
JFJ84_RS01860 (JFJ84_01855)	clpP	366712..367293 (-)	582	WP_012341086.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JFJ84_RS01865 (JFJ84_01860)	tig	367379..368677 (-)	1299	WP_011609585.1	trigger factor	-
JFJ84_RS01870 (JFJ84_01865)	pilB	369060..370451 (+)	1392	WP_136122165.1	GspE/PulE family protein	Machinery gene

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 46069.83 Da
• Isoelectric Point: 4.5662

>NTDB_id=455733 JFJ84_RS01855 WP_012341085.1 365452..366696(-) (clpX) [Histophilus somni strain ASc-MMNZ-VFA-069]
MTKEKELHCSFCGKEQKEVDKLIAGTSGYICNECIELCHDMLANADDIEEIDEEFQEEEPKLPTPHEIRAHLDDYVIGQD
YAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIEKAQQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRVDTSK
ILFICGGAFAGLDKIIEKRTNTSGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMKFGLIPEFIGRLPVIAPLSELDEEA
LVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIENLQKVIVEEE
TVTENKVPVLKFNS

Nucleotide

• Length: 1245 bp

>NTDB_id=455733 JFJ84_RS01855 WP_012341085.1 365452..366696(-) (clpX) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGACAAAAGAAAAAGAATTACATTGCTCTTTTTGTGGTAAGGAACAAAAAGAAGTAGATAAATTAATTGCAGGCACATC
CGGTTATATTTGTAATGAGTGTATTGAATTATGTCATGACATGTTAGCTAATGCGGATGACATCGAAGAAATTGATGAAG
AATTTCAAGAGGAAGAGCCTAAATTACCGACACCACATGAAATTCGTGCACATTTAGATGATTATGTCATAGGCCAAGAT
TATGCTAAAAAAGTATTAGCTGTGGCGGTGTATAATCATTATAAACGTTTACGTAGCGAAAAAAATACTTCTGAGGTTGA
ATTGGGCAAAAGTAATATTTTGCTTATCGGCCCGACAGGCAGTGGCAAGACTTTATTGGCACAAACGTTAGCTCGTATGC
TCAATGTTCCCTTTGCAATGGCAGATGCAACAACTTTAACTGAAGCGGGATATGTTGGTGAAGATGTTGAAAATGTCTTG
CAAAAATTATTACAAAATTGTGATTATGATATAGAGAAAGCTCAACAAGGTATTATCTATATTGATGAAATTGATAAGAT
TACACGTAAGTCTGAAAATCCTTCTATTACTCGTGATGTATCAGGCGAAGGTGTGCAGCAGGCTTTACTAAAATTAGTTG
AAGGAACGGTAGCTTCTATTCCTCCACAAGGCGGACGAAAGCATCCTCAACAAGAAATGTTGCGTGTGGACACCTCTAAG
ATTTTATTTATTTGTGGCGGTGCTTTTGCCGGTTTAGATAAAATTATTGAGAAAAGAACGAATACCAGTGGCAAAGGTAT
TGGTTTTGGTGCTGATGTTCGTATTGATGAAGAGAAAGTCAGTTTAACCGAATTATTTAAGCAAGTTGAACCTGATGATT
TAATGAAATTTGGCTTAATACCGGAGTTTATCGGTCGTTTACCTGTTATCGCACCTTTAAGCGAACTGGATGAGGAGGCT
TTGGTAAAAATTTTAACTGAGCCGAAAAATGCCCTAACTAAGCAATATCAAGTTTTATTCAGCTTAGAAAATATTGAATT
AGAATTTACCCAAGAAGCATTGATTGCAATGGCGAAAAAAGCACTAGCTCGTAAAACAGGTGCCAGAGGTTTGCGATCTA
TTGTTGAAACCCTATTGCTTGATACTATGTATGATCTCCCTTCTATTGAAAACTTACAGAAAGTTATAGTGGAAGAAGAA
ACAGTCACCGAAAATAAAGTGCCAGTATTGAAGTTCAATAGTTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-310)

3D structure

• AlphaFold DB: B0UW19

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.894	100	0.592
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.074	97.826	0.529