Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   A7A1_RS20495 Genome accession   NC_019896
Coordinates   3983535..3983765 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3978535..3988765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS20485 (A7A1_1829) spoVT 3979260..3979796 (-) 537 WP_003218365.1 stage V sporulation protein T -
  A7A1_RS20490 (A7A1_1828) mfd 3979932..3983465 (-) 3534 WP_015253006.1 transcription-repair coupling factor -
  A7A1_RS20495 (A7A1_1827) subA/fin 3983535..3983765 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  A7A1_RS20500 (A7A1_1826) pth 3983825..3984391 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  A7A1_RS20505 (A7A1_1825) rplYB 3984498..3985112 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  A7A1_RS20510 prsS 3985197..3986150 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  A7A1_RS20515 glmU 3986173..3987543 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  A7A1_RS20525 (A7A1_1824) spoVG 3987736..3988029 (-) 294 WP_003218346.1 septation regulator SpoVG -
  A7A1_RS20530 (A7A1_1823) ridA 3988223..3988600 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=45486 A7A1_RS20495 WP_003243417.1 3983535..3983765(-) (subA/fin) [Bacillus subtilis subsp. subtilis str. BSP1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=45486 A7A1_RS20495 WP_003243417.1 3983535..3983765(-) (subA/fin) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment