Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HUO05_RS13115 Genome accession   NZ_CP054700
Coordinates   2804362..2805471 (+) Length   369 a.a.
NCBI ID   WP_176311221.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2799362..2810471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS13095 (HUO05_13095) rsmB 2800282..2801565 (-) 1284 WP_017821576.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HUO05_RS13100 (HUO05_13100) fmt 2801646..2802593 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  HUO05_RS13105 (HUO05_13105) def 2802627..2803145 (-) 519 WP_064368875.1 peptide deformylase -
  HUO05_RS13110 (HUO05_13110) - 2803284..2804378 (+) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  HUO05_RS13115 (HUO05_13115) dprA 2804362..2805471 (+) 1110 WP_176311221.1 DNA-processing protein DprA Machinery gene
  HUO05_RS13120 (HUO05_13120) - 2805474..2805953 (+) 480 WP_005379074.1 DUF494 family protein -
  HUO05_RS13125 (HUO05_13125) - 2806030..2806599 (+) 570 WP_053308100.1 type I DNA topoisomerase -
  HUO05_RS13130 (HUO05_13130) - 2806656..2807789 (-) 1134 WP_176311222.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HUO05_RS13135 (HUO05_13135) purE 2807794..2808279 (-) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HUO05_RS13140 (HUO05_13140) - 2808479..2809036 (+) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  HUO05_RS13145 (HUO05_13145) hemF 2809084..2810001 (+) 918 WP_053350839.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40026.77 Da        Isoelectric Point: 7.2604

>NTDB_id=454039 HUO05_RS13115 WP_176311221.1 2804362..2805471(+) (dprA) [Vibrio alginolyticus strain GS_MYPK1]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRSLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=454039 HUO05_RS13115 WP_176311221.1 2804362..2805471(+) (dprA) [Vibrio alginolyticus strain GS_MYPK1]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGCTTACAGCATGCTC
GCCACTTTGCCGCCGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCCGGTGGTAAGACGATTGCGGTGCTAGGATCTGGTTTAGCAAATATTTATCCAGCACGTCATCG
TAGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTGCTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379