Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JDY60_RS08815 Genome accession   NZ_CP066172
Coordinates   1843353..1843946 (+) Length   197 a.a.
NCBI ID   WP_200370739.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838353..1848946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS08795 (JDY60_08795) - 1838688..1839128 (-) 441 WP_200370735.1 LytTR family DNA-binding domain-containing protein -
  JDY60_RS08800 (JDY60_08800) hexB 1839337..1841286 (+) 1950 WP_200370736.1 DNA mismatch repair endonuclease MutL Machinery gene
  JDY60_RS08805 (JDY60_08805) - 1841438..1841938 (-) 501 WP_200370737.1 helix-turn-helix domain-containing protein -
  JDY60_RS08810 (JDY60_08810) - 1842108..1843340 (+) 1233 WP_200370738.1 MFS transporter -
  JDY60_RS08815 (JDY60_08815) ruvA 1843353..1843946 (+) 594 WP_200370739.1 Holliday junction branch migration protein RuvA Machinery gene
  JDY60_RS08820 (JDY60_08820) - 1843956..1844522 (+) 567 WP_200370741.1 DNA-3-methyladenine glycosylase I -
  JDY60_RS08825 (JDY60_08825) - 1844602..1844865 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  JDY60_RS08830 (JDY60_08830) - 1844971..1846005 (-) 1035 WP_200370742.1 S66 peptidase family protein -
  JDY60_RS08835 (JDY60_08835) - 1846273..1846620 (-) 348 WP_200370743.1 TfoX/Sxy family protein -
  JDY60_RS08840 (JDY60_08840) - 1846636..1847313 (-) 678 WP_200370744.1 DUF1129 domain-containing protein -
  JDY60_RS08845 (JDY60_08845) - 1847325..1848269 (-) 945 WP_000815620.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21758.20 Da        Isoelectric Point: 6.2573

>NTDB_id=454017 JDY60_RS08815 WP_200370739.1 1843353..1843946(+) (ruvA) [Streptococcus oralis strain SF100]
MYEYFKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=454017 JDY60_RS08815 WP_200370739.1 1843353..1843946(+) (ruvA) [Streptococcus oralis strain SF100]
ATGTACGAATATTTTAAAGGAATCATTACCAAAATCACTGCTAAATACATCGTCCTAGAAGCTAACGGTATCGGCTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTGAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTCCGTG
AGGATGCCCATCTGCTTTACGGCTTTCGTTCAGAAGACGAGAAGAAGCTCTTTCTCAGCTTGATTTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAGGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAACAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCACTGGGCTACAAGGCAACCGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGACACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.954

100

0.97
  ruvA Streptococcus pneumoniae R6

96.447

100

0.964
  ruvA Streptococcus pneumoniae D39

96.447

100

0.964
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426