Detailed information NTG0454019

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JDY60_RS09185
• Genome accession: NZ_CP066172
• Coordinates: 1906503..1907501 (+)
• Length: 332 a.a.
• NCBI ID: WP_080976497.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SF100
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1901503..1912501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDY60_RS09170 (JDY60_09170)	-	1901855..1903054 (-)	1200	WP_200370793.1	OFA family MFS transporter	-
JDY60_RS09175 (JDY60_09175)	-	1903273..1903881 (+)	609	WP_000779605.1	NADPH-dependent FMN reductase	-
JDY60_RS09180 (JDY60_09180)	-	1903907..1906318 (+)	2412	WP_200370795.1	flavocytochrome c	-
JDY60_RS09185 (JDY60_09185)	ruvB	1906503..1907501 (+)	999	WP_080976497.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JDY60_RS09190 (JDY60_09190)	-	1907482..1908066 (+)	585	WP_049477448.1	nucleotidyltransferase family protein	-
JDY60_RS09195 (JDY60_09195)	-	1908273..1909031 (+)	759	WP_000466705.1	isoprenyl transferase	-
JDY60_RS09200 (JDY60_09200)	-	1909040..1909843 (+)	804	WP_049477447.1	phosphatidate cytidylyltransferase	-
JDY60_RS09205 (JDY60_09205)	eeP	1909859..1911115 (+)	1257	WP_000579743.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37261.66 Da
• Isoelectric Point: 4.4666

>NTDB_id=454019 JDY60_RS09185 WP_080976497.1 1906503..1907501(+) (ruvB) [Streptococcus oralis strain SF100]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=454019 JDY60_RS09185 WP_080976497.1 1906503..1907501(+) (ruvB) [Streptococcus oralis strain SF100]
ATGAGTAGAATTTTAGATAATGAAATCATGGGGGATGAGGAGTTGGTAGAACGTACCCTCCGTCCTCAGTATTTACGTGA
ATATATTGGGCAGGATAAGGTCAAGGACCAGCTGCAAATCTTTATCGAAGCTGCCAAAATGCGGGATGAGGCACTGGACC
ATGTTCTTTTATTTGGTCCTCCAGGTCTCGGGAAAACAACCATGGCCTTTGTTATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCAGGTCCTGTCATTGAAAAAGCGGGTGACCTGGTAGCGATTTTGAATGATTTGGAGCCTGGAGACGTTCT
CTTTATTGACGAGATTCATCGCTTGCCCATGTCGGTGGAAGAGGTGCTTTATAGTGCCATGGAAGACTTCTACATTGATA
TCATGATTGGTGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGACTTGCCACCATTCACCTTGATTGGTGCAACGACACGA
GCTGGGATGCTTTCAAATCCTCTTCGTGCCCGTTTTGGGATTACAGGTCACATGGAGTATTATACCCATGCTGACTTGAC
AGAGATTGTCGAGCGGACGGCAGATATCTTTGAGATGGAAATCACTCATGAAGCTGCATCTGAGTTAGCTTTACGCAGTC
GTGGAACTCCTCGTATTGCTAATCGTCTCCTCAAGCGCGTGCGTGACTTTGCGCAGATTATGGGCGATGGCTTGATTGAT
GATGTCATTACGGATAAGGCCTTGACTATGCTGGATGTAGACCATGAAGGTTTGGACTATGTGGACCAGAAAATCCTTCG
TACCATGATTGAGATGTACGGTGGTGGTCCTGTCGGTTTAGGAACTCTTTCTGTTAATATTGCCGAGGAGCGTGAGACAG
TCGAAGATATGTACGAACCTTACCTGATTCAGAAAGGTTTCATCATGCGAACTCGTTCTGGGCGGGTTGCAACGGCTAAG
GCATATGAGCATTTAGGGTATGAATACAGTGAAAAATGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	98.193	100	0.982
ruvB	Streptococcus pneumoniae R6	97.892	100	0.979
ruvB	Streptococcus pneumoniae D39	97.892	100	0.979
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.35	98.193	0.602
ruvB	Helicobacter pylori 26695	51.393	97.289	0.5
ruvB	Synechocystis sp. PCC 6803	48.193	100	0.482