Detailed information NTG0454019

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUO05_RS10030
• Genome accession: NZ_CP054700
• Coordinates: 2171755..2172624 (+)
• Length: 289 a.a.
• NCBI ID: WP_158159768.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain GS_MYPK1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2166755..2177624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUO05_RS10010 (HUO05_10010)	nadC	2167177..2168064 (+)	888	WP_176311155.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HUO05_RS10015 (HUO05_10015)	pilA	2168330..2168758 (+)	429	WP_050912911.1	type IV pilin protein	Machinery gene
HUO05_RS10020 (HUO05_10020)	pilB	2168758..2170443 (+)	1686	WP_158159767.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HUO05_RS10025 (HUO05_10025)	pilC	2170467..2171690 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
HUO05_RS10030 (HUO05_10030)	pilD	2171755..2172624 (+)	870	WP_158159768.1	A24 family peptidase	Machinery gene
HUO05_RS10035 (HUO05_10035)	coaE	2172625..2173239 (+)	615	WP_158159769.1	dephospho-CoA kinase	-
HUO05_RS10040 (HUO05_10040)	zapD	2173267..2174007 (+)	741	WP_005373086.1	cell division protein ZapD	-
HUO05_RS10045 (HUO05_10045)	yacG	2174166..2174360 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
HUO05_RS10050 (HUO05_10050)	rplS	2175015..2175368 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
HUO05_RS10055 (HUO05_10055)	trmD	2175410..2176171 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HUO05_RS10060 (HUO05_10060)	rimM	2176199..2176747 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
HUO05_RS10065 (HUO05_10065)	rpsP	2176777..2177025 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32585.77 Da
• Isoelectric Point: 7.0195

>NTDB_id=454019 HUO05_RS10030 WP_158159768.1 2171755..2172624(+) (pilD) [Vibrio alginolyticus strain GS_MYPK1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIVLALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGFIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=454019 HUO05_RS10030 WP_158159768.1 2171755..2172624(+) (pilD) [Vibrio alginolyticus strain GS_MYPK1]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGTCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCCTCTGTGGTTGGCATC
GTATTTGGCTTCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.648	94.464	0.488
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	47.826	95.502	0.457