Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HUO05_RS10015 | Genome accession | NZ_CP054700 |
| Coordinates | 2168330..2168758 (+) | Length | 142 a.a. |
| NCBI ID | WP_050912911.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain GS_MYPK1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2163330..2173758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUO05_RS10000 (HUO05_10000) | pdhR | 2165360..2166127 (-) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| HUO05_RS10005 (HUO05_10005) | ampD | 2166533..2167084 (-) | 552 | WP_005386614.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HUO05_RS10010 (HUO05_10010) | nadC | 2167177..2168064 (+) | 888 | WP_176311155.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HUO05_RS10015 (HUO05_10015) | pilA | 2168330..2168758 (+) | 429 | WP_050912911.1 | type IV pilin protein | Machinery gene |
| HUO05_RS10020 (HUO05_10020) | pilB | 2168758..2170443 (+) | 1686 | WP_158159767.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HUO05_RS10025 (HUO05_10025) | pilC | 2170467..2171690 (+) | 1224 | WP_017635918.1 | type II secretion system F family protein | Machinery gene |
| HUO05_RS10030 (HUO05_10030) | pilD | 2171755..2172624 (+) | 870 | WP_158159768.1 | A24 family peptidase | Machinery gene |
| HUO05_RS10035 (HUO05_10035) | coaE | 2172625..2173239 (+) | 615 | WP_158159769.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14510.54 Da Isoelectric Point: 5.7554
>NTDB_id=454016 HUO05_RS10015 WP_050912911.1 2168330..2168758(+) (pilA) [Vibrio alginolyticus strain GS_MYPK1]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADGDAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADGDAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=454016 HUO05_RS10015 WP_050912911.1 2168330..2168758(+) (pilA) [Vibrio alginolyticus strain GS_MYPK1]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACTTTCATTGCTGATACTGGCACCTTTCCTGCTGATGGCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCTACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACTTTCATTGCTGATACTGGCACCTTTCCTGCTGATGGCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCTACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.252 |
100 |
0.486 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.948 |
100 |
0.387 |