Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FX987_RS05515 Genome accession   NZ_CP054580
Coordinates   1235520..1236752 (-) Length   410 a.a.
NCBI ID   WP_022523592.1    Uniprot ID   A0AAP9NKD7
Organism   Vreelandella titanicae strain GPM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230520..1241752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX987_RS05480 (FX987_01096) - 1230564..1230938 (+) 375 WP_022523599.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  FX987_RS05485 (FX987_01097) - 1231027..1231857 (-) 831 WP_022523598.1 helix-turn-helix transcriptional regulator -
  FX987_RS05490 (FX987_01098) - 1232232..1232591 (+) 360 WP_035537408.1 hypothetical protein -
  FX987_RS05495 (FX987_01099) - 1232615..1233502 (-) 888 WP_022523596.1 hypothetical protein -
  FX987_RS05500 (FX987_01100) yacG 1233542..1233775 (-) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  FX987_RS05505 (FX987_01101) coaE 1233811..1234413 (-) 603 WP_022523594.1 dephospho-CoA kinase -
  FX987_RS05510 (FX987_01102) pilD 1234482..1235327 (-) 846 WP_022523593.1 prepilin peptidase Machinery gene
  FX987_RS05515 (FX987_01103) pilC 1235520..1236752 (-) 1233 WP_022523592.1 type II secretion system F family protein Machinery gene
  FX987_RS05520 (FX987_01104) pilB 1236756..1238504 (-) 1749 WP_089690942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FX987_RS05525 (FX987_01105) - 1238746..1239261 (+) 516 WP_022523590.1 pilin -
  FX987_RS05530 (FX987_01106) - 1239370..1239804 (+) 435 WP_022523589.1 anti-virulence regulator CigR family protein -
  FX987_RS05535 (FX987_01107) - 1239899..1240720 (+) 822 WP_022523588.1 inositol monophosphatase family protein -
  FX987_RS26510 - 1241073..1241183 (-) 111 WP_309599316.1 IS66 family transposase zinc-finger binding domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44710.63 Da        Isoelectric Point: 10.6296

>NTDB_id=453621 FX987_RS05515 WP_022523592.1 1235520..1236752(-) (pilC) [Vreelandella titanicae strain GPM3]
MAKTARRRQTPAIKLARWKWIGKGPQDRALSGEMIGRSKAEVAAKLTKQNIVIRRISKKGNLGGNGRVNPNDVMVFARQM
ATMVRAGIPLLQALQVVAESLKKPAMVALMQQMISDVSSGSSFSDALNRHPKHFDRLFVNLVSAGEQSGALDQMLDRLAT
YKEKVESLKARVKKALWYPTTVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQLTVNLSGLAQRYWLAALGAVIAA
VLLLRISIQRSPNVAYRMHALLLRLPVIGDIMHKSAIARFSRTLATTFASGVPLVEGLDTAAGATGNKVYERAVAQTRQD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDVMLNRVADYYEEEVDNKVDALTSLMEPVIIVVLGVLVGGVVVSMY
LPIFDLGAAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=453621 FX987_RS05515 WP_022523592.1 1235520..1236752(-) (pilC) [Vreelandella titanicae strain GPM3]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAAGCTAGCGCGCTGGAAATGGATCGGTAAAGGCCCCCAGGA
TAGAGCGCTAAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTAAACTCACCAAGCAAAATATCGTTATCC
GCCGGATTAGTAAAAAAGGCAACCTAGGTGGCAACGGCCGAGTTAACCCCAACGACGTTATGGTCTTTGCGCGCCAGATG
GCCACAATGGTTCGCGCCGGTATCCCCTTGCTACAGGCGCTTCAAGTGGTGGCAGAGAGCCTCAAAAAACCTGCTATGGT
TGCCCTAATGCAACAGATGATAAGCGATGTATCATCGGGCTCCAGCTTCTCTGATGCATTGAACCGCCACCCCAAACACT
TTGATCGCCTGTTTGTTAACCTAGTCAGCGCCGGCGAGCAGTCAGGTGCGCTGGATCAAATGCTTGATCGTCTTGCGACC
TATAAGGAGAAGGTTGAGTCGCTGAAAGCGCGAGTAAAAAAAGCGCTTTGGTACCCCACCACCGTTATGACGATTGGCAT
TGCTGTGACCATGTTGCTGTTGATTAAAGTGGTGCCTGAATTTGAAAGCATGTTCCAGAGCTTTGGTGCAGAGCTTCCCG
CACTGACCCAGTTGACCGTGAATTTATCCGGGCTTGCCCAGCGTTATTGGCTAGCGGCGCTCGGCGCGGTGATTGCTGCC
GTCCTACTACTCAGAATAAGCATTCAGCGCTCGCCTAATGTCGCTTACCGCATGCACGCTTTGCTGCTTCGGTTACCGGT
CATTGGCGATATCATGCATAAATCCGCCATCGCCCGCTTTTCGCGTACCTTAGCGACTACCTTTGCCTCCGGTGTACCGC
TCGTAGAAGGCTTAGATACCGCCGCCGGTGCCACCGGCAATAAAGTGTACGAACGCGCGGTGGCACAAACGCGCCAGGAC
GTAGCCACCGGACAACAGCTACACTTCGCCATGCGGATGACCAACCGCTTTCCCCCCTTGGCAATCCAAATGGTCAGTAT
CGGTGAAGAAGCGGGGTCGCTGGATGTCATGCTTAATCGTGTTGCCGATTACTACGAAGAAGAAGTCGACAATAAGGTCG
ATGCTCTTACCTCGCTCATGGAGCCGGTTATTATTGTAGTACTGGGCGTGCTCGTTGGCGGTGTGGTTGTCTCTATGTAC
TTACCCATTTTCGACTTGGGCGCAGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.332

94.146

0.493
  pilC Acinetobacter baumannii D1279779

51.436

93.415

0.48
  pilC Pseudomonas stutzeri DSM 10701

47.87

97.317

0.466
  pilC Legionella pneumophila strain ERS1305867

47.044

99.024

0.466
  pilC Vibrio cholerae strain A1552

43.489

99.268

0.432
  pilG Neisseria meningitidis 44/76-A

43.25

97.561

0.422
  pilG Neisseria gonorrhoeae MS11

43.25

97.561

0.422
  pilC Vibrio campbellii strain DS40M4

42.506

99.268

0.422