Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6H74_RS06930 Genome accession   NZ_CP066069
Coordinates   1415917..1416759 (-) Length   280 a.a.
NCBI ID   WP_115256883.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1410917..1421759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS06915 (I6H74_06910) - 1411758..1412702 (+) 945 WP_012766955.1 IS982 family transposase -
  I6H74_RS06920 (I6H74_06915) - 1412725..1413608 (+) 884 Protein_1313 LysR family transcriptional regulator -
  I6H74_RS06925 (I6H74_06920) topA 1413684..1415816 (-) 2133 WP_014612281.1 type I DNA topoisomerase -
  I6H74_RS06930 (I6H74_06925) dprA 1415917..1416759 (-) 843 WP_115256883.1 DNA-processing protein DprA Machinery gene
  I6H74_RS06935 (I6H74_06930) - 1416866..1417636 (-) 771 WP_022554642.1 ribonuclease HII -
  I6H74_RS06940 (I6H74_06935) ylqF 1417626..1418474 (-) 849 WP_003062503.1 ribosome biogenesis GTPase YlqF -
  I6H74_RS10910 - 1419197..1419586 (-) 390 WP_232089461.1 hypothetical protein -
  I6H74_RS06950 (I6H74_06945) - 1419936..1420376 (+) 441 WP_003050852.1 DUF1836 domain-containing protein -
  I6H74_RS06955 (I6H74_06950) - 1420373..1421023 (+) 651 WP_115256882.1 hemolysin III family protein -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31364.37 Da        Isoelectric Point: 8.8194

>NTDB_id=453569 I6H74_RS06930 WP_115256883.1 1415917..1416759(-) (dprA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIETYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AVIGTGLDRFYPKENQELQTFLGRKHLILTEYGPEEEPLSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=453569 I6H74_RS06930 WP_115256883.1 1415917..1416759(-) (dprA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAGGCTGGACTGACTAATAAAAATATTCTCAATATTCTTGACTACCAAAA
GCAACAGGAAAAATCGTTGTCGCTTCGAGACATGGCCGTTGTTTCCGGTTGTAAGCACCCGTCTCACTTTATAGAAACCT
ATAAGCAGTTAGATATCCAAAAGTTAAAAATGGAATTTAAACAATTCCCTAGTATTTCTATCCTAGATAAACATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATAAACCTAAATT
AGCCATTGTGGGCTCAAGGCGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTCAGCGGACTTGCTCGAGGTATTGACACTAGTGCACATTTAGCCTGTCTTAAAAACGGAGGACAAACCATT
GCGGTGATAGGAACAGGATTAGACCGTTTTTATCCCAAAGAAAATCAAGAATTACAAACATTCTTAGGAAGGAAACACCT
TATCTTGACGGAATACGGTCCAGAAGAAGAACCACTATCGTATCACTTTCCGGAACGCAATCGTATTATTGCAGGGCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

66.906

99.286

0.664

  dprA/cilB/dalA Streptococcus mitis SK321

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.215

99.643

0.6

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.857

99.643

0.596

  dprA Lactococcus lactis subsp. cremoris KW2

56.835

99.286

0.564

  dprA Legionella pneumophila strain ERS1305867

43.333

85.714

0.371

  dprA Haemophilus influenzae Rd KW20

38.202

95.357

0.364

  dprA Acinetobacter baumannii D1279779

37.828

95.357

0.361