Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LL3_RS08830 Genome accession   NC_017190
Coordinates   1728045..1729295 (+) Length   416 a.a.
NCBI ID   WP_013352317.1    Uniprot ID   A0A9P1NHF2
Organism   Bacillus amyloliquefaciens LL3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1723045..1734295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS08800 (LL3_01846) yfmH 1723141..1724427 (+) 1287 WP_013352312.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LL3_RS08805 (LL3_01847) ymfI 1724486..1725214 (+) 729 WP_013352313.1 elongation factor P 5-aminopentanone reductase -
  LL3_RS08810 (LL3_01848) - 1725290..1725547 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  LL3_RS08815 (LL3_01849) - 1725675..1726466 (+) 792 WP_013352314.1 YmfK family protein -
  LL3_RS08820 (LL3_01850) - 1726485..1727372 (+) 888 WP_013352315.1 RodZ domain-containing protein -
  LL3_RS08825 (LL3_01851) pgsA 1727446..1728027 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LL3_RS08830 (LL3_01852) cinA 1728045..1729295 (+) 1251 WP_013352317.1 competence/damage-inducible protein A Machinery gene
  LL3_RS08835 (LL3_01853) recA 1729467..1730510 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  LL3_RS08840 (LL3_01854) - 1730677..1731858 (+) 1182 WP_013352319.1 serine hydrolase -
  LL3_RS08845 (LL3_01855) rny 1732149..1733708 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44918.16 Da        Isoelectric Point: 4.9791

>NTDB_id=45247 LL3_RS08830 WP_013352317.1 1728045..1729295(+) (cinA) [Bacillus amyloliquefaciens LL3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEGKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGLVFIGISAEGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=45247 LL3_RS08830 WP_013352317.1 1728045..1729295(+) (cinA) [Bacillus amyloliquefaciens LL3]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAATGTGTTTTATCATACCGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCTGGCGGGCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
TGCGAAAACAAAACGGACAATGTCGCCGAATAACCGCAAACAGGCACTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGGGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGACTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTCACGCTGCGTTTAACGGCAAAACATGCCGACGAAAAAGAAACCGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCTTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAAAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTAAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGTGTTGCGGGCCCTGATCCGCAGGAAGGGCATGCCCCGGGCCTCGTCT
TTATCGGTATTTCCGCTGAAGGCAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAGTCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38

Multiple sequence alignment