NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	HTY60_RS21195	Genome accession	NZ_CP054415
Coordinates	3466943..3467377 (-)	Length	144 a.a.
NCBI ID	WP_289394470.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain 205
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3461943..3472377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTY60_RS17910 (HTY60_17910)	fliW	3462035..3462466 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
HTY60_RS17915 (HTY60_17915)	-	3462496..3463065 (-)	570	WP_014471091.1	DUF6470 family protein	-
HTY60_RS17920 (HTY60_17920)	flgL	3463157..3464074 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
HTY60_RS17925 (HTY60_17925)	flgK	3464086..3465601 (-)	1516	Protein_3531	flagellar hook-associated protein FlgK	-
HTY60_RS17930 (HTY60_17930)	-	3465617..3466099 (-)	483	WP_013353780.1	flagellar protein FlgN	-
HTY60_RS17935 (HTY60_17935)	flgM	3466114..3466380 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
HTY60_RS17940 (HTY60_17940)	-	3466450..3466869 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
HTY60_RS21195	comFC	3466943..3467377 (-)	435	WP_289394470.1	phosphoribosyltransferase family protein	Machinery gene
HTY60_RS21200	-	3467462..3467620 (-)	159	Protein_3536	double zinc ribbon domain-containing protein	-
HTY60_RS17950 (HTY60_17950)	-	3467638..3467922 (-)	285	WP_013353784.1	competence protein ComFB	-
HTY60_RS17955 (HTY60_17955)	comFA	3467981..3469366 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
HTY60_RS17960 (HTY60_17960)	-	3469473..3470321 (-)	849	WP_013353786.1	DegV family protein	-
HTY60_RS17965 (HTY60_17965)	degU	3470418..3471107 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
HTY60_RS17970 (HTY60_17970)	degS	3471184..3472347 (-)	1164	WP_174202011.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15713.12 Da Isoelectric Point: 10.3140

                                >NTDB_id=452350 HTY60_RS21195 WP_289394470.1 3466943..3467377(-) (comFC) [Bacillus amyloliquefaciens strain 205]

MKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRLNNEKQ

SKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

Download Length: 435 bp

                                >NTDB_id=452350 HTY60_RS21195 WP_289394470.1 3466943..3467377(-) (comFC) [Bacillus amyloliquefaciens strain 205]

ATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGG

CTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGAT

TTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAA

TCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGT

CATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGT

TATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(81-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	65.972	100	0.66
comFC/cflB	Streptococcus mitis NCTC 12261	38.462	99.306	0.382
comFC/cflB	Streptococcus mitis SK321	37.762	99.306	0.375
comFC/cflB	Streptococcus pneumoniae TIGR4	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae Rx1	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae D39	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae R6	37.063	99.306	0.368
comFC	Lactococcus lactis subsp. cremoris KW2	36.364	99.306	0.361

Detailed information NTG0452350