Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HTY60_RS17955 Genome accession   NZ_CP054415
Coordinates   3467981..3469366 (-) Length   461 a.a.
NCBI ID   WP_013353785.1    Uniprot ID   A0A9P1NJB2
Organism   Bacillus amyloliquefaciens strain 205     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462981..3474366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS17920 (HTY60_17920) flgL 3463157..3464074 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  HTY60_RS17925 (HTY60_17925) flgK 3464086..3465601 (-) 1516 Protein_3531 flagellar hook-associated protein FlgK -
  HTY60_RS17930 (HTY60_17930) - 3465617..3466099 (-) 483 WP_013353780.1 flagellar protein FlgN -
  HTY60_RS17935 (HTY60_17935) flgM 3466114..3466380 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  HTY60_RS17940 (HTY60_17940) - 3466450..3466869 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  HTY60_RS21195 comFC 3466943..3467377 (-) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  HTY60_RS21200 - 3467462..3467620 (-) 159 Protein_3536 double zinc ribbon domain-containing protein -
  HTY60_RS17950 (HTY60_17950) - 3467638..3467922 (-) 285 WP_013353784.1 competence protein ComFB -
  HTY60_RS17955 (HTY60_17955) comFA 3467981..3469366 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  HTY60_RS17960 (HTY60_17960) - 3469473..3470321 (-) 849 WP_013353786.1 DegV family protein -
  HTY60_RS17965 (HTY60_17965) degU 3470418..3471107 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HTY60_RS17970 (HTY60_17970) degS 3471184..3472347 (-) 1164 WP_174202011.1 two-component sensor histidine kinase DegS Regulator
  HTY60_RS17975 (HTY60_17975) - 3472570..3473217 (+) 648 WP_013353788.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52689.28 Da        Isoelectric Point: 10.2042

>NTDB_id=452338 HTY60_RS17955 WP_013353785.1 3467981..3469366(-) (comFA) [Bacillus amyloliquefaciens strain 205]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=452338 HTY60_RS17955 WP_013353785.1 3467981..3469366(-) (comFA) [Bacillus amyloliquefaciens strain 205]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625