Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HTY60_RS17970 Genome accession   NZ_CP054415
Coordinates   3471184..3472347 (-) Length   387 a.a.
NCBI ID   WP_174202011.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3466184..3477347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS17940 (HTY60_17940) - 3466450..3466869 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  HTY60_RS21195 comFC 3466943..3467377 (-) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  HTY60_RS21200 - 3467462..3467620 (-) 159 Protein_3536 double zinc ribbon domain-containing protein -
  HTY60_RS17950 (HTY60_17950) - 3467638..3467922 (-) 285 WP_013353784.1 competence protein ComFB -
  HTY60_RS17955 (HTY60_17955) comFA 3467981..3469366 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  HTY60_RS17960 (HTY60_17960) - 3469473..3470321 (-) 849 WP_013353786.1 DegV family protein -
  HTY60_RS17965 (HTY60_17965) degU 3470418..3471107 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HTY60_RS17970 (HTY60_17970) degS 3471184..3472347 (-) 1164 WP_174202011.1 two-component sensor histidine kinase DegS Regulator
  HTY60_RS17975 (HTY60_17975) - 3472570..3473217 (+) 648 WP_013353788.1 YigZ family protein -
  HTY60_RS17980 (HTY60_17980) - 3473222..3474496 (+) 1275 WP_013353789.1 LCP family protein -
  HTY60_RS17985 (HTY60_17985) - 3474596..3475672 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -
  HTY60_RS17990 (HTY60_17990) - 3475805..3477001 (-) 1197 WP_013353791.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45018.81 Da        Isoelectric Point: 7.1379

>NTDB_id=452340 HTY60_RS17970 WP_174202011.1 3471184..3472347(-) (degS) [Bacillus amyloliquefaciens strain 205]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLISTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=452340 HTY60_RS17970 WP_174202011.1 3471184..3472347(-) (degS) [Bacillus amyloliquefaciens strain 205]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTTCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.065

99.483

0.946