Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HTY60_RS00020 Genome accession   NZ_CP054415
Coordinates   3034..4146 (+) Length   370 a.a.
NCBI ID   WP_151282494.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS00005 (HTY60_00005) dnaA 1..1341 (+) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  HTY60_RS00010 (HTY60_00010) dnaN 1527..2663 (+) 1137 WP_174201870.1 DNA polymerase III subunit beta -
  HTY60_RS00015 (HTY60_00015) rlbA 2803..3018 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  HTY60_RS00020 (HTY60_00020) recF 3034..4146 (+) 1113 WP_151282494.1 DNA replication/repair protein RecF Machinery gene
  HTY60_RS00025 (HTY60_00025) remB 4164..4409 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  HTY60_RS00030 (HTY60_00030) gyrB 4466..6382 (+) 1917 WP_151282496.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HTY60_RS00035 (HTY60_00035) gyrA 6599..9058 (+) 2460 WP_151282495.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42440.40 Da        Isoelectric Point: 7.0422

>NTDB_id=452276 HTY60_RS00020 WP_151282494.1 3034..4146(+) (recF) [Bacillus amyloliquefaciens strain 205]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSYLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=452276 HTY60_RS00020 WP_151282494.1 3034..4146(+) (recF) [Bacillus amyloliquefaciens strain 205]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCTATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946